Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_T7_D23
(806 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 168 4e-42
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 168 4e-42
09_04_0225 - 15855544-15855727,15855796-15856406 30 1.9
03_02_0792 + 11236785-11237337,11237711-11238261,11238446-112386... 30 1.9
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 29 3.3
01_01_1003 - 7939376-7939414,7939464-7939568,7939757-7939872,794... 29 3.3
07_03_1207 - 24881074-24881906,24882204-24882285,24882921-24882926 29 5.8
06_03_0543 + 21967787-21970261 29 5.8
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423 28 7.6
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 168 bits (409), Expect = 4e-42
Identities = 74/126 (58%), Positives = 95/126 (75%)
Frame = -3
Query: 705 AAHTGVTXIAXRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNT 526
A +TG IA R TPG FTNQ+Q +F EPRLLI+ DP DHQPI E++ NIP IA C+T
Sbjct: 95 AQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDT 154
Query: 525 DSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEES 346
DSP+R+VDI IP N K SIG ++WLLAR VL++RG + +WDV+VDLFFYRDPEE+
Sbjct: 155 DSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEA 214
Query: 345 EKDEQQ 328
++ E++
Sbjct: 215 KEQEEE 220
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 168 bits (409), Expect = 4e-42
Identities = 74/126 (58%), Positives = 96/126 (76%)
Frame = -3
Query: 705 AAHTGVTXIAXRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNT 526
A +TG IA R TPG FTNQ+Q +F EPRLLI+ DP DHQPI E++ NIP IA C+T
Sbjct: 95 AQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDT 154
Query: 525 DSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEES 346
DSP+R+VDI IP N K +SIG ++WLLAR VL++RG + +WDV+VDLFFYRDPEE+
Sbjct: 155 DSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEA 214
Query: 345 EKDEQQ 328
++ E++
Sbjct: 215 KEQEEE 220
>09_04_0225 - 15855544-15855727,15855796-15856406
Length = 264
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Frame = -2
Query: 229 GYRPACCTRCSSC-FWSTPC--SRRMVCPGTR 143
G P+ TRC SC W+T C + R CP TR
Sbjct: 171 GATPSATTRCRSCTAWATSCPGTSRAGCPPTR 202
>03_02_0792 +
11236785-11237337,11237711-11238261,11238446-11238628,
11238768-11238966,11239055-11239761
Length = 730
Score = 30.3 bits (65), Expect = 1.9
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = -3
Query: 717 CXEVAAHTGVTXIAXRFTPGAFTNQIQAAFREPRLLI--VLDPAQDHQPITEASYVNIPV 544
C V HT T R TP AF + AA E R+ + + ++ EA Y +I V
Sbjct: 264 CWGVFRHTLSTGETVRVTPAAFDSVTPAAIDETRVAVAAIRQKSEFSDVRVEAQYRHIEV 323
Query: 543 IALCNTDSPLR 511
+ + + P++
Sbjct: 324 FDMRSPEQPMQ 334
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 29.5 bits (63), Expect = 3.3
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 208 TRCSSCFWSTPCSRRMVCPGTR*VEHN 128
T C C P + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301
>01_01_1003 -
7939376-7939414,7939464-7939568,7939757-7939872,
7941494-7942760
Length = 508
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 207 VQQAGRYPQPMKPLAPVFHSSLHGQ 281
V+++ RYP P +PLAP+ S HG+
Sbjct: 223 VEKSVRYPLPPRPLAPICVFSHHGR 247
>07_03_1207 - 24881074-24881906,24882204-24882285,24882921-24882926
Length = 306
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +3
Query: 165 LLEQGVLQKQELQRVQQAGRYPQPMKPLAP 254
LLE+ + KQ+ Q+ QQAG P +P+AP
Sbjct: 178 LLEKLKIAKQQQQQQQQAGPEPPRGEPIAP 207
>06_03_0543 + 21967787-21970261
Length = 824
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -3
Query: 459 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 370
L W++L RE +LRGV P + ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501
>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
Length = 427
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -2
Query: 208 TRCSSCFWSTPCSRRMVCPGTR*VEHN 128
T+C C P VCPG+R V N
Sbjct: 93 TQCKECLAGAPAGITQVCPGSRTVNAN 119
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,527,859
Number of Sequences: 37544
Number of extensions: 386927
Number of successful extensions: 953
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -