Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_D22
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   210   2e-55
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   210   2e-55
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    29   0.75 
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   3.0  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   4.0  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    26   7.0  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    25   9.2  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.2  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  210 bits (513), Expect = 2e-55
 Identities = 102/161 (63%), Positives = 122/161 (75%)
 Frame = -3

Query: 590 GTQRSCPVRHNKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKK 411
           GT+R  P + ++GLRKVACIGAWHP+ V +TVARAG  GY HRT++N KIYRIG G    
Sbjct: 234 GTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---D 289

Query: 410 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVH 231
           D K    NAST++D +EK ITPMGGF  YG V NDFVM+ G   GP KR++TLRKSL  H
Sbjct: 290 DAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTH 345

Query: 230 TKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 108
           T R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 346 TSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386



 Score = 55.6 bits (128), Expect = 8e-09
 Identities = 30/73 (41%), Positives = 38/73 (52%)
 Frame = -2

Query: 771 QXKAHIMXSNLXVVPSRTK*NGPREHXEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSR 592
           Q KAH+M   +       K    REH EK + + S F Q+EMID I           T+R
Sbjct: 173 QKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTAR 232

Query: 591 WHTKKLPRKTQQG 553
           W TK+LPRKT +G
Sbjct: 233 WGTKRLPRKTHRG 245


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  210 bits (513), Expect = 2e-55
 Identities = 102/161 (63%), Positives = 122/161 (75%)
 Frame = -3

Query: 590 GTQRSCPVRHNKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKK 411
           GT+R  P + ++GLRKVACIGAWHP+ V +TVARAG  GY HRT++N KIYRIG G    
Sbjct: 234 GTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---D 289

Query: 410 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVH 231
           D K    NAST++D +EK ITPMGGF  YG V NDFVM+ G   GP KR++TLRKSL  H
Sbjct: 290 DAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTH 345

Query: 230 TKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 108
           T R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 346 TSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386



 Score = 55.6 bits (128), Expect = 8e-09
 Identities = 30/73 (41%), Positives = 38/73 (52%)
 Frame = -2

Query: 771 QXKAHIMXSNLXVVPSRTK*NGPREHXEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSR 592
           Q KAH+M   +       K    REH EK + + S F Q+EMID I           T+R
Sbjct: 173 QKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTAR 232

Query: 591 WHTKKLPRKTQQG 553
           W TK+LPRKT +G
Sbjct: 233 WGTKRLPRKTHRG 245


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 399 NFAILFVDSLSNTIDFLVHFSTVMITFLTSTSY 497
           NFA+L+  SL ++ +F++H +T    +   T+Y
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY 409


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 366 QVILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTS 488
           ++ L RC++   F +LF  S S +  FL   S + I + +S
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 129 HGYTQEGSYSRRSCGYHNPS 70
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 351 NGFLRQVILSRCIVFNNFAI-LFVDSLSNTIDFLVHFSTVMITF 479
           N FL  +  SRC V  N+ I + V S    ++F++     M+ +
Sbjct: 366 NSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAVCEAMMLY 409


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 411 LFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNA 536
           LF+D LS   D L+H   ++ +    T  S  H      SNA
Sbjct: 421 LFIDGLSTFSDTLIHLHKMLNSSPEETYISNLHDSYTAFSNA 462


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +3

Query: 423 SLSNTIDFLVHFSTVMITFLTSTSYSERH---PRRMPSSNAGNFPKTLVVSYGAASLCA 590
           +LSNT  FLV    + I+F T  +Y E +    RR  S+      K+L+  Y   S  A
Sbjct: 11  NLSNTSAFLVKSKPLYISFCTCKAYFEDNTSLSRRFFSAKKSLQFKSLIRKYSEDSTLA 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,242,540
Number of Sequences: 5004
Number of extensions: 67563
Number of successful extensions: 181
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)