Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_D22
         (781 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p pro...   301   9e-82
AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal pr...   301   9e-82
AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE...   301   9e-82
AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB...   301   9e-82
AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA...   301   9e-82

>BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p
           protein.
          Length = 465

 Score =  301 bits (738), Expect = 9e-82
 Identities = 138/163 (84%), Positives = 149/163 (91%)
 Frame = -3

Query: 581 RSCPVRHNKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGK 402
           +  P + +KGLRKVACIGAWHPSRVS TVARAGQKGYHHRTE+NKKIYRIG GIH KDGK
Sbjct: 249 KKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKDGK 308

Query: 401 VIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKR 222
           VIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL  HTKR
Sbjct: 309 VIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKR 368

Query: 221 AALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 93
           +ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++EE
Sbjct: 369 SALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEE 411



 Score = 78.6 bits (185), Expect = 9e-15
 Identities = 40/76 (52%), Positives = 44/76 (57%)
 Frame = -2

Query: 780 KQXQXKAHIMXSNLXVVPSRTK*NGPREHXEKPIPVDSVFAQDEMIDCIXXXXXXXXXXX 601
           KQ Q KAH+M   L       K    REH EKPI V +VF QDEMIDC+           
Sbjct: 183 KQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGV 242

Query: 600 TSRWHTKKLPRKTQQG 553
           TSRWHTKKLPRKT +G
Sbjct: 243 TSRWHTKKLPRKTHKG 258


>AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal
           protein L3 protein.
          Length = 416

 Score =  301 bits (738), Expect = 9e-82
 Identities = 138/163 (84%), Positives = 149/163 (91%)
 Frame = -3

Query: 581 RSCPVRHNKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGK 402
           +  P + +KGLRKVACIGAWHPSRVS TVARAGQKGYHHRTE+NKKIYRIG GIH KDGK
Sbjct: 238 KKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKDGK 297

Query: 401 VIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKR 222
           VIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL  HTKR
Sbjct: 298 VIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKR 357

Query: 221 AALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 93
           +ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++EE
Sbjct: 358 SALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEE 400



 Score = 78.6 bits (185), Expect = 9e-15
 Identities = 40/76 (52%), Positives = 44/76 (57%)
 Frame = -2

Query: 780 KQXQXKAHIMXSNLXVVPSRTK*NGPREHXEKPIPVDSVFAQDEMIDCIXXXXXXXXXXX 601
           KQ Q KAH+M   L       K    REH EKPI V +VF QDEMIDC+           
Sbjct: 172 KQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGV 231

Query: 600 TSRWHTKKLPRKTQQG 553
           TSRWHTKKLPRKT +G
Sbjct: 232 TSRWHTKKLPRKTHKG 247


>AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE,
           isoform E protein.
          Length = 403

 Score =  301 bits (738), Expect = 9e-82
 Identities = 138/163 (84%), Positives = 149/163 (91%)
 Frame = -3

Query: 581 RSCPVRHNKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGK 402
           +  P + +KGLRKVACIGAWHPSRVS TVARAGQKGYHHRTE+NKKIYRIG GIH KDGK
Sbjct: 225 KKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKDGK 284

Query: 401 VIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKR 222
           VIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL  HTKR
Sbjct: 285 VIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKR 344

Query: 221 AALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 93
           +ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++EE
Sbjct: 345 SALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEE 387



 Score = 78.6 bits (185), Expect = 9e-15
 Identities = 40/76 (52%), Positives = 44/76 (57%)
 Frame = -2

Query: 780 KQXQXKAHIMXSNLXVVPSRTK*NGPREHXEKPIPVDSVFAQDEMIDCIXXXXXXXXXXX 601
           KQ Q KAH+M   L       K    REH EKPI V +VF QDEMIDC+           
Sbjct: 159 KQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGV 218

Query: 600 TSRWHTKKLPRKTQQG 553
           TSRWHTKKLPRKT +G
Sbjct: 219 TSRWHTKKLPRKTHKG 234


>AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB,
           isoform B protein.
          Length = 403

 Score =  301 bits (738), Expect = 9e-82
 Identities = 138/163 (84%), Positives = 149/163 (91%)
 Frame = -3

Query: 581 RSCPVRHNKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGK 402
           +  P + +KGLRKVACIGAWHPSRVS TVARAGQKGYHHRTE+NKKIYRIG GIH KDGK
Sbjct: 225 KKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKDGK 284

Query: 401 VIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKR 222
           VIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL  HTKR
Sbjct: 285 VIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKR 344

Query: 221 AALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 93
           +ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++EE
Sbjct: 345 SALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEE 387



 Score = 78.6 bits (185), Expect = 9e-15
 Identities = 40/76 (52%), Positives = 44/76 (57%)
 Frame = -2

Query: 780 KQXQXKAHIMXSNLXVVPSRTK*NGPREHXEKPIPVDSVFAQDEMIDCIXXXXXXXXXXX 601
           KQ Q KAH+M   L       K    REH EKPI V +VF QDEMIDC+           
Sbjct: 159 KQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGV 218

Query: 600 TSRWHTKKLPRKTQQG 553
           TSRWHTKKLPRKT +G
Sbjct: 219 TSRWHTKKLPRKTHKG 234


>AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA,
           isoform A protein.
          Length = 416

 Score =  301 bits (738), Expect = 9e-82
 Identities = 138/163 (84%), Positives = 149/163 (91%)
 Frame = -3

Query: 581 RSCPVRHNKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGK 402
           +  P + +KGLRKVACIGAWHPSRVS TVARAGQKGYHHRTE+NKKIYRIG GIH KDGK
Sbjct: 238 KKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKDGK 297

Query: 401 VIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKR 222
           VIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL  HTKR
Sbjct: 298 VIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKR 357

Query: 221 AALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 93
           +ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++EE
Sbjct: 358 SALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEE 400



 Score = 78.6 bits (185), Expect = 9e-15
 Identities = 40/76 (52%), Positives = 44/76 (57%)
 Frame = -2

Query: 780 KQXQXKAHIMXSNLXVVPSRTK*NGPREHXEKPIPVDSVFAQDEMIDCIXXXXXXXXXXX 601
           KQ Q KAH+M   L       K    REH EKPI V +VF QDEMIDC+           
Sbjct: 172 KQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGV 231

Query: 600 TSRWHTKKLPRKTQQG 553
           TSRWHTKKLPRKT +G
Sbjct: 232 TSRWHTKKLPRKTHKG 247


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,526,561
Number of Sequences: 53049
Number of extensions: 767219
Number of successful extensions: 1992
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1987
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3623012976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)