Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_D17
         (1120 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.89 

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.89
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +2

Query: 641 GAPPPPPXXXGXGGAXXAXPP 703
           G PPPPP   G  GA    PP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPP 779



 Score = 27.5 bits (58), Expect = 3.6
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +3

Query: 591 GGGGXPPXSXXXXXXGGAPPPPPRXXXXXGGXXXXXP 701
           GG   PP        G  PPPPP      GG     P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795



 Score = 27.1 bits (57), Expect = 4.7
 Identities = 13/47 (27%), Positives = 15/47 (31%)
 Frame = +3

Query: 639 GAPPPPPRXXXXXGGXXXXXPXXXXXXSXXXAXXLXPXPPFPPXPXL 779
           G PPPPP      G      P      S   +    P P   P P +
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEPKI 805



 Score = 26.2 bits (55), Expect = 8.3
 Identities = 11/31 (35%), Positives = 12/31 (38%)
 Frame = +1

Query: 610 PLPXXXXXXXGRPPPPPXGXXXGGGXXXXXP 702
           P+P       G PPPPP     G G     P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.146    0.490 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,145,223
Number of Sequences: 5004
Number of extensions: 29352
Number of successful extensions: 114
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 593670236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)