Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_D15
         (804 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual      45   1e-05
SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual      38   0.002
SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit Rpn10|...    29   0.58 
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    29   1.0  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   3.1  
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p...    26   7.2  

>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 272

 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 41/171 (23%), Positives = 71/171 (41%), Gaps = 3/171 (1%)
 Frame = -1

Query: 669 FNESNYYMEGNTXHPVFATRYGKIAVNICFGRHHVLNWMMFGQNGAEIVFNPSATIAGEG 490
           F+    + +  +  P+F T +GK+ V IC+         +   NGA+++      +A   
Sbjct: 122 FDTERKHFKKGSDFPIFETSFGKLGVMICWDTAFPEVARIHALNGADLL-----VVATNW 176

Query: 489 GSEYM--WNVEARNAAITNCCFTAAINRVGYEEFPNEFTSADGKPAHKDLGLFYGSSYFC 316
            + Y   W++  +  A  NC    A NRVG +E  +                F+G S   
Sbjct: 177 ENPYSDDWDLVTKARAFENCIPLVAANRVGTDEKLS----------------FFGHSKII 220

Query: 315 GPDGVRCPGLSRTRDGLLIAAVDLNLNRQIRDRRCYYMTQRL-DMYVNSLS 166
           GP G     L   ++G++   VDL+  + +R     +   R+ D+Y   LS
Sbjct: 221 GPTGKVIKALDEEKEGVISYTVDLDDAKPLRKNYYTFFEDRMPDLYKRLLS 271


>SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 276

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 41/149 (27%), Positives = 56/149 (37%), Gaps = 2/149 (1%)
 Frame = -1

Query: 663 ESNYYMEGNTXHPVFATRYGKIAVNICFGRHHVLNWMMFGQNGAEIVFNPSATIAGEGGS 484
           ESN  + G    P   T  GK+   ICF        +     GA I+  PSA     G +
Sbjct: 130 ESNTTLRGEAILPPCKTPLGKVGSAICFDIRFPEQAIKLRNMGAHIITYPSAFTEKTGAA 189

Query: 483 EYMWNVEARNAAITNCCFTAAINRVGYEEFPNEFTSADGKPAHKDLGLFYGSSYFCGPDG 304
              W V  R  A+ + C+  A              +  GK  H +    YG S    P G
Sbjct: 190 H--WEVLLRARALDSQCYVIA-------------PAQGGK--HNEKRASYGHSMIVDPWG 232

Query: 303 VRCPGLS--RTRDGLLIAAVDLNLNRQIR 223
                 S   + +GL+ A +DLNL   +R
Sbjct: 233 TVIAQYSDISSPNGLIFADLDLNLVDHVR 261


>SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit
           Rpn10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 243

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 434 QQFVIAAFLASTFHMYSLPPSPAIVAD 514
           Q F+ AA  + + H+ S+PPSP +++D
Sbjct: 154 QHFIDAANSSDSCHLVSIPPSPQLLSD 180


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 32/128 (25%), Positives = 45/128 (35%), Gaps = 7/128 (5%)
 Frame = +2

Query: 407 PTRLMAAVKQQFVIAAFLASTFHMYSLPPSPAIVADGLKTISAPFCPNIIQFKTWCRPKQ 586
           P+   +     F  +  LAS    YS P    ++           C N+I+F        
Sbjct: 38  PSSFQSPSPSPFASSTSLASKPARYSKPLGLFVLDTNFLLSHLSLCQNLIEF-------- 89

Query: 587 MFTAILPYLVANTGWXVLPSM**LDSLKSPTLGM-------WFLRCFRSRFRCPNDXXVF 745
             TA  P LV    W VL  +  L S  S T G        + L+CFRS         V 
Sbjct: 90  -LTARCPRLVVVLPWTVLQELDGLKSESSSTCGYLARQAHNFLLQCFRSNVSSLRGQKVH 148

Query: 746 KVCPNASR 769
           + C +  +
Sbjct: 149 EHCSSTEK 156


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 557  QFKTWCRPKQMFTAILPYLVANTGWXVLPS 646
            +F T    K +FTA+ P+L A T + ++PS
Sbjct: 1521 RFPTRVLCKPVFTAVPPFLFAGTDFALIPS 1550


>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 404

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/55 (23%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
 Frame = +2

Query: 389 FGNSS*PTRLMAAVKQQFVIAAFLASTFHMYSLPPSP---AIVADGLKTISAPFC 544
           F N S  + L++  + +++ + F ++   ++++P  P   A++A GL ++  P C
Sbjct: 243 FTNGSPYSLLLSDDRWEYLASLFTSNFTAVHNIPSVPLLHALLAAGLSSLKTPLC 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,002,797
Number of Sequences: 5004
Number of extensions: 58076
Number of successful extensions: 161
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)