Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_T7_D15
(804 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683... 256 2e-68
02_04_0096 + 19669428-19669525,19670770-19670818,19671041-196711... 48 9e-06
02_05_0058 + 25478274-25478421,25478963-25479142,25479714-254800... 37 0.016
02_01_0487 + 3503003-3503037,3505802-3505833,3506012-3506127,350... 30 2.5
04_03_1018 + 21753634-21753640,21754282-21754315,21754413-217544... 29 5.7
04_01_0376 - 4929447-4929731 29 5.7
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199... 28 7.6
11_04_0354 + 16697571-16700256,16700335-16700759 28 10.0
05_03_0526 + 15021174-15021363,15021743-15021843,15021893-15022033 28 10.0
>07_03_0405 -
17767303-17767665,17767815-17768039,17768115-17768342,
17768607-17768621,17768622-17768810,17769106-17769213,
17769917-17770045
Length = 418
Score = 256 bits (627), Expect = 2e-68
Identities = 123/186 (66%), Positives = 140/186 (75%)
Frame = -1
Query: 687 IPRVGDFNESNYYMEGNTXHPVFATRYGKIAVNICFGRHHVLNWMMFGQNGAEIVFNPSA 508
IPRVGDFNES YYMEGNT HPVF T YGKI VNIC+GRHH LNW+ FG NGAEIVFNPSA
Sbjct: 226 IPRVGDFNESTYYMEGNTGHPVFETAYGKIGVNICYGRHHPLNWLAFGLNGAEIVFNPSA 285
Query: 507 TIAGEGGSEYMWNVEARNAAITNCCFTAAINRVGYEEFPNEFTSADGKPAHKDLGLFYGS 328
T+ GE SE MW +EARNAAI N F +INRVG E FPN FTS DGKP H D G FYGS
Sbjct: 286 TV-GEL-SEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHADFGHFYGS 343
Query: 327 SYFCGPDGVRCPGLSRTRDGLLIAAVDLNLNRQIRDRRCYYMTQRLDMYVNSLSKVLELD 148
S+F PD P LSR RDGL+I+ +DLNL RQI+D+ + MT R D Y + LS+ L+ D
Sbjct: 344 SHFSAPDASCTPSLSRYRDGLMISDMDLNLCRQIKDKWGFRMTARYDTYASLLSEYLKPD 403
Query: 147 YKPQVV 130
+KPQV+
Sbjct: 404 FKPQVI 409
>02_04_0096 +
19669428-19669525,19670770-19670818,19671041-19671132,
19671235-19671386,19671478-19671524,19671617-19671650,
19671769-19671935,19672070-19672166,19672239-19672408
Length = 301
Score = 48.0 bits (109), Expect = 9e-06
Identities = 47/175 (26%), Positives = 71/175 (40%), Gaps = 6/175 (3%)
Frame = -1
Query: 687 IPRVGDFNESNYYMEGNTXHPVFATRYGKIAVNICFGRHHVLNWMMFGQNGAEIVFNPSA 508
IP + E Y+ G+T F T+Y I V IC+ + GAEI+F P+A
Sbjct: 126 IPDGPGYQEKFYFNPGDTGFKAFKTKYATIGVGICWDQWFPECARAMVLQGAEILFYPTA 185
Query: 507 TIAGEG-----GSEYMWNVEARNAAITNCCFTAAINRVGYEEFPNEFTSADGKPAHKDLG 343
I E S W + A N A NR+G E E H +
Sbjct: 186 -IGSEPQDNNLDSREHWKRVMQGHAGANLVPLVASNRIGRETVETE---------HGEST 235
Query: 342 L-FYGSSYFCGPDGVRCPGLSRTRDGLLIAAVDLNLNRQIRDRRCYYMTQRLDMY 181
+ F+G+S+ GP G + + +L+A DL+ + R + +R D+Y
Sbjct: 236 ITFFGNSFIAGPTGEIVKLANDKDEDVLVAEFDLDEIKSTRHGWGIFRDRRPDLY 290
>02_05_0058 +
25478274-25478421,25478963-25479142,25479714-25480007,
25480261-25480564,25480672-25480751,25480765-25480934
Length = 391
Score = 37.1 bits (82), Expect = 0.016
Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 6/136 (4%)
Frame = -1
Query: 645 EGNTXHPVFATRYGKIAVNICF-GRHHVLNWMMFGQNGAEIVFNPSATIAGEGGSEYMWN 469
+G+T PV+ T GKI IC+ R +L M+ + G +I P+A + W
Sbjct: 173 DGSTI-PVYDTPIGKIGAVICWENRMPLLRTAMYAK-GVQIYCAPTADFSPS------WQ 224
Query: 468 VEARNAAITNCCFTAAIN----RVGYEEFPN-EFTSADGKPAHKDLGLFYGSSYFCGPDG 304
+ A+ CF + N R Y P F D +P+ + + ++ G S P G
Sbjct: 225 ASMTHIAVEGGCFVLSANQFCRRKNYPPAPEYTFGGLDEEPSPESV-IWPGGSSIVSPSG 283
Query: 303 VRCPGLSRTRDGLLIA 256
G + +GLL A
Sbjct: 284 TVLAGPNYEGEGLLTA 299
>02_01_0487 +
3503003-3503037,3505802-3505833,3506012-3506127,
3506227-3506437,3506555-3506792,3507075-3507252,
3507962-3508079,3508167-3508373,3509134-3509234
Length = 411
Score = 29.9 bits (64), Expect = 2.5
Identities = 21/64 (32%), Positives = 32/64 (50%)
Frame = -1
Query: 522 FNPSATIAGEGGSEYMWNVEARNAAITNCCFTAAINRVGYEEFPNEFTSADGKPAHKDLG 343
F+PS I GEGG ++ + RN + + +R G +EF NE A +H++L
Sbjct: 45 FSPSNKI-GEGGFGSVYKGKLRNGKLVAVKVLSLESRQGAKEFLNEL-MAISNVSHENLV 102
Query: 342 LFYG 331
YG
Sbjct: 103 KLYG 106
>04_03_1018 +
21753634-21753640,21754282-21754315,21754413-21754432,
21754485-21755782
Length = 452
Score = 28.7 bits (61), Expect = 5.7
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +1
Query: 265 QAVSGAGQTGAPNAVGAAEVARSVEQAQVFVCRFPVSRSELVRELLVADSVDGRCEAAV 441
+ SG P+A+ A E + E ++ V R P LVR + + +S + E AV
Sbjct: 342 KCASGGCAGAVPSALAAVEALAASEAGRMAVARAPGGTRALVRHVFMMNSSNDGSEHAV 400
>04_01_0376 - 4929447-4929731
Length = 94
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 597 RSCRIWSRIQDGRCYLPCSSW 659
RSC W +Q GRC CS+W
Sbjct: 63 RSCAAW--LQQGRCSAGCSAW 81
>06_01_0268 +
1989069-1989293,1989938-1990020,1990136-1990357,
1990434-1990621,1990711-1990835,1990988-1991039,
1991585-1991874,1992229-1992307,1992527-1992657
Length = 464
Score = 28.3 bits (60), Expect = 7.6
Identities = 23/83 (27%), Positives = 37/83 (44%)
Frame = +2
Query: 299 LTPSGPQK*LDP*NRPKSLCAGFPSAEVNSFGNSS*PTRLMAAVKQQFVIAAFLASTFHM 478
L P GP + L P + + P ++ S + + +AA +QQ V FLA +
Sbjct: 236 LPPPGPME-LVPHEKKRGDTKDHPLSQWFSNFSEADELLKLAAARQQLV-NVFLAKLYIP 293
Query: 479 YSLPPSPAIVADGLKTISAPFCP 547
Y + +I+A L + A CP
Sbjct: 294 YQFQEATSILASPLAHVPASSCP 316
>11_04_0354 + 16697571-16700256,16700335-16700759
Length = 1036
Score = 27.9 bits (59), Expect = 10.0
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +1
Query: 196 LGHVITTSVSDLSVQVQVHGRD*QAVSGAGQTGAPNAVG 312
LG V+ TSVS+LS Q+Q+ +SG G N VG
Sbjct: 331 LGGVLPTSVSNLSAQLQLLYVGFNKISGNIPFGISNLVG 369
>05_03_0526 + 15021174-15021363,15021743-15021843,15021893-15022033
Length = 143
Score = 27.9 bits (59), Expect = 10.0
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = -3
Query: 256 GRGLEPEQTDQRQTLLLHDPTPGHVREQSQQSTRAGLQ 143
G+G EP+ D ++ L ++D PG E Q S+ AGL+
Sbjct: 89 GKGHEPDWRDLQELLRIYD--PGTSTECKQASSGAGLR 124
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,512,540
Number of Sequences: 37544
Number of extensions: 425495
Number of successful extensions: 1250
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1248
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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