Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_D14
         (1017 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0066 - 536281-537196,537397-537452                               29   7.9  
08_02_1084 - 24232968-24234779                                         29   7.9  
04_03_0689 + 18746735-18748296,18748401-18748485                       29   7.9  

>11_01_0066 - 536281-537196,537397-537452
          Length = 323

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +1

Query: 166 PPFSLPGXKXAXNPPXKRXPPPXNXGAPP 252
           PP S P    A  PP    PPP +   PP
Sbjct: 211 PPASPPPPSIATPPPSPASPPPPSTATPP 239


>08_02_1084 - 24232968-24234779
          Length = 603

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +1

Query: 166 PPFSLPGXKXAXNPPXKRXPPPXNXGAPP 252
           PP SLP       PP ++ PPP     PP
Sbjct: 60  PPPSLPPPLPQKQPPSQQLPPPPQQQQPP 88


>04_03_0689 + 18746735-18748296,18748401-18748485
          Length = 548

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = +2

Query: 167 PPFPSRGXXGPXTPLXKGXPPPXIXGPPRGXFFXKPKXXXFF 292
           PP P +    P TPL    PP     P +G F   P+    F
Sbjct: 19  PPQPQQQGGSPATPLGHLRPPSLAGSPFQGLFHTPPQHNPAF 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,404,446
Number of Sequences: 37544
Number of extensions: 285468
Number of successful extensions: 893
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2998973440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)