Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_D13
         (855 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0616 + 4616936-4617307,4618723-4618809,4619322-4619384,461...    31   1.5  
01_01_0846 - 6606054-6606239                                           29   4.7  
12_01_0904 + 8791474-8792261,8792935-8793037,8794009-8794055,879...    29   6.2  
07_03_1151 + 24385272-24386543                                         28   8.3  
05_04_0454 + 21383068-21384525                                         28   8.3  
02_05_0409 - 28723534-28724646                                         28   8.3  

>02_01_0616 +
           4616936-4617307,4618723-4618809,4619322-4619384,
           4619478-4619537,4619570-4619602,4621584-4621751
          Length = 260

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 22/47 (46%), Positives = 25/47 (53%)
 Frame = +3

Query: 450 RAARPLPLRSPLDLHRGGSRHYRGPESGKGPSPTRLGGEDSAXRXPP 590
           R AR  P  SPLD + GGS    G  SG G + +  GGED A   PP
Sbjct: 72  RWARASPA-SPLD-YSGGSGS--GSGSGSGSAASTSGGEDGAFCSPP 114


>01_01_0846 - 6606054-6606239
          Length = 61

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = -3

Query: 244 ASLG*AAPSGCSVDRGSPPTSSGVRVXG 161
           A+LG   P  CSV +GS   SSGV V G
Sbjct: 2   AALGWEEPRRCSVGKGSGGRSSGVAVLG 29


>12_01_0904 +
           8791474-8792261,8792935-8793037,8794009-8794055,
           8795180-8795717
          Length = 491

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 564 RRRAGSEKGLCPTPAPCNGGFPP 496
           RR + S  G+ P+ APC GG+ P
Sbjct: 128 RRASASFSGVSPSAAPCYGGYLP 150


>07_03_1151 + 24385272-24386543
          Length = 423

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 572 TILAAEPGRRRAFARLRPPVMAASPP 495
           T++AA P RRR   R+  P  A +PP
Sbjct: 152 TVIAAPPRRRRRSMRVAAPAPAPAPP 177


>05_04_0454 + 21383068-21384525
          Length = 485

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 24/83 (28%), Positives = 29/83 (34%), Gaps = 6/83 (7%)
 Frame = +3

Query: 147 PLNDSPXTLTPDEVGGLPRSTLQPDGAAHP---KDAQPTEPSRRIEGSETSAVSXXXXXX 317
           PL+D       D+   LPR    PDGA  P      +  +  R    S   A S      
Sbjct: 88  PLDDDDDDEVEDDDHDLPRPPDDPDGARSPGPSHSERMAKTDRSTTASHAEAASTVTTPC 147

Query: 318 XXXXXXXXXGI---PRWTRTSLP 377
                    G+   PR T TSLP
Sbjct: 148 SHAADDGGHGVTTSPRTTTTSLP 170


>02_05_0409 - 28723534-28724646
          Length = 370

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = -3

Query: 436 SALPRSYERATGWQCIASRPGRLVLVQRGIPGHQRHCLGGLTGCRTETADVSEP 275
           +AL  SY        ++S  G LVL++R  P H  H +  LTG       +  P
Sbjct: 79  AALLSSYPVPGDATLLSSSRGHLVLLRRRDPFHGLHLVDALTGATRHALPLPSP 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,305,920
Number of Sequences: 37544
Number of extensions: 377882
Number of successful extensions: 1379
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1378
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)