Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_D11
         (895 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical pr...    31   1.5  
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    31   1.5  
Z77662-15|CAI79240.1|  255|Caenorhabditis elegans Hypothetical p...    30   1.9  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    29   3.4  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    29   3.4  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    29   3.4  
Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   4.5  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   4.5  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   4.5  
AC024809-7|AAF59540.1|  315|Caenorhabditis elegans Hypothetical ...    29   4.5  
Z77662-14|CAI79239.1|  245|Caenorhabditis elegans Hypothetical p...    29   5.9  
AF067219-3|AAC17027.1|   74|Caenorhabditis elegans Hypothetical ...    29   5.9  
U00058-3|AAD31933.1|  162|Caenorhabditis elegans Ground-like (gr...    26   7.6  
Z81124-1|CAB03369.1|  312|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    28   7.8  
AF068713-14|AAK73895.1|  172|Caenorhabditis elegans Ground-like ...    28   7.8  

>Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical
           protein E02A10.2 protein.
          Length = 385

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 20/61 (32%), Positives = 20/61 (32%)
 Frame = -3

Query: 608 GXAXXGGGGRXGXAXGXXGXGXCXXXXXXXXXXXXXPPXGGGGXXXPPFFXKXXXPPPPP 429
           G    GGGG  G   G  G G C                GGGG            PPPPP
Sbjct: 63  GGCGGGGGGCGGGGGGCGGGGGCGGGGGGCG-------GGGGGCGGGGGCGGGCAPPPPP 115

Query: 428 P 426
           P
Sbjct: 116 P 116



 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = +1

Query: 427 GGGGGGXXXXXKXGGXKXPPPP 492
           GGGGGG       GG   PPPP
Sbjct: 93  GGGGGGCGGGGGCGGGCAPPPP 114


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -3

Query: 500 PPXGGGGXXXPPFFXKXXXPPPPP 429
           PP G GG   PP       PPPPP
Sbjct: 76  PPPGPGGIPPPPPMFAGGIPPPPP 99



 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = -3

Query: 500 PPXGGGGXXXPPFFXKXXXPPPPPP 426
           PP  GG    PP F     PPPPPP
Sbjct: 98  PPMMGGIPPPPPMFGAP--PPPPPP 120


>Z77662-15|CAI79240.1|  255|Caenorhabditis elegans Hypothetical
           protein F47B8.14 protein.
          Length = 255

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = +1

Query: 427 GGGGGGXXXXXKXGGXKXPPPP 492
           GGGGGG       GG   PPPP
Sbjct: 23  GGGGGGYSGGGGGGGDAAPPPP 44


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = -3

Query: 500 PPXGGGGXXXPPFFXKXXXPPPPPPR 423
           PP   GG   PP       PPPPPPR
Sbjct: 281 PPPPAGGSPPPP--RAGSPPPPPPPR 304


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = -3

Query: 500 PPXGGGGXXXPPFFXKXXXPPPPPPR 423
           PP   GG   PP       PPPPPPR
Sbjct: 302 PPPPAGGSPPPP--RAGSPPPPPPPR 325


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = -3

Query: 500 PPXGGGGXXXPPFFXKXXXPPPPPPR 423
           PP   GG   PP       PPPPPPR
Sbjct: 287 PPPPAGGSPPPP--RAGSPPPPPPPR 310


>Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 22/65 (33%), Positives = 22/65 (33%)
 Frame = -3

Query: 620 GXXKGXAXXGGGGRXGXAXGXXGXGXCXXXXXXXXXXXXXPPXGGGGXXXPPFFXKXXXP 441
           G   G    GGGG  G A G  G G                  GGGG   P        P
Sbjct: 258 GSSGGGYSTGGGG--GYAGGGGGGGGSSGGYAGSS--------GGGGYSAPAAAPPPPPP 307

Query: 440 PPPPP 426
           PPPPP
Sbjct: 308 PPPPP 312


>Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 22/65 (33%), Positives = 22/65 (33%)
 Frame = -3

Query: 620 GXXKGXAXXGGGGRXGXAXGXXGXGXCXXXXXXXXXXXXXPPXGGGGXXXPPFFXKXXXP 441
           G   G    GGGG  G A G  G G                  GGGG   P        P
Sbjct: 258 GSSGGGYSTGGGG--GYAGGGGGGGGSSGGYAGSS--------GGGGYSAPAAAPPPPPP 307

Query: 440 PPPPP 426
           PPPPP
Sbjct: 308 PPPPP 312


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -3

Query: 500 PPXGGGGXXXPPFFXKXXXPPPPPP 426
           PP  GG    PP       PPPPPP
Sbjct: 752 PPISGGPPPPPPPPGGCPPPPPPPP 776


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -3

Query: 500 PPXGGGGXXXPPFFXKXXXPPPPPP 426
           PP  GG    PP       PPPPPP
Sbjct: 752 PPISGGPPPPPPPPGGCPPPPPPPP 776


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -3

Query: 500 PPXGGGGXXXPPFFXKXXXPPPPPP 426
           PP  GG    PP       PPPPPP
Sbjct: 335 PPISGGPPPPPPPPGGCPPPPPPPP 359


>AC024809-7|AAF59540.1|  315|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.9 protein.
          Length = 315

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +1

Query: 427 GGGGGGXXXXXKXGGXKXPPPPXGG 501
           GGGGG        G    PPPP GG
Sbjct: 196 GGGGGSGGSGGGSGRFPPPPPPYGG 220


>Z77662-14|CAI79239.1|  245|Caenorhabditis elegans Hypothetical
           protein F47B8.13 protein.
          Length = 245

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +1

Query: 427 GGGGGGXXXXXKXGGXKXPPPP 492
           GGGGGG        G + PPPP
Sbjct: 20  GGGGGGEAGYSGGAGVEAPPPP 41


>AF067219-3|AAC17027.1|   74|Caenorhabditis elegans Hypothetical
           protein R12E2.6 protein.
          Length = 74

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
 Frame = -3

Query: 497 PXGGG-GXXXPPFFXKXXXPPPPPPRXF 417
           P GGG G   PPF       PPPPP  +
Sbjct: 42  PCGGGFGPPPPPFGPVGYALPPPPPNGY 69


>U00058-3|AAD31933.1|  162|Caenorhabditis elegans Ground-like (grd
           related) protein22 protein.
          Length = 162

 Score = 25.8 bits (54), Expect(2) = 7.6
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +1

Query: 427 GGGGGGXXXXXKXGGXKXPPPPXGG 501
           GGGGGG            PPPP  G
Sbjct: 24  GGGGGGGGCAPAAPACAPPPPPMCG 48



 Score = 21.0 bits (42), Expect(2) = 7.6
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 547 PXPXXPXAXPXLPPPP 594
           P P    A P  PPPP
Sbjct: 43  PPPMCGCAPPPPPPPP 58


>Z81124-1|CAB03369.1|  312|Caenorhabditis elegans Hypothetical
           protein T21B4.2 protein.
          Length = 312

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = -2

Query: 507 PXPPXGXGGXFXAPXFXXXGPXPPPXPPG 421
           P  P G G     P     GP  PP PPG
Sbjct: 183 PGAPGGPGAPGNTPSGGAAGPPGPPGPPG 211


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 16/51 (31%), Positives = 18/51 (35%)
 Frame = +1

Query: 469 GXKXPPPPXGGXXXXXXXXXXXXXXXPXPXXPXAXPXLPPPPXXAXPXXXP 621
           G   PPPP G                P P  P A P + PPP  + P   P
Sbjct: 331 GGMPPPPPPG------MRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPP 375


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 16/51 (31%), Positives = 18/51 (35%)
 Frame = +1

Query: 469 GXKXPPPPXGGXXXXXXXXXXXXXXXPXPXXPXAXPXLPPPPXXAXPXXXP 621
           G   PPPP G                P P  P A P + PPP  + P   P
Sbjct: 341 GGMPPPPPPG------MRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPP 385


>AF068713-14|AAK73895.1|  172|Caenorhabditis elegans Ground-like
           (grd related) protein29 protein.
          Length = 172

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 18/56 (32%), Positives = 19/56 (33%)
 Frame = -3

Query: 593 GGGGRXGXAXGXXGXGXCXXXXXXXXXXXXXPPXGGGGXXXPPFFXKXXXPPPPPP 426
           GG G  G   G  G G C                GGGG      +     PPPPPP
Sbjct: 26  GGAGGCGGGGGCGGGGGCGGGCGY---------GGGGGCGYGGGYGCGIPPPPPPP 72


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,429,487
Number of Sequences: 27780
Number of extensions: 217386
Number of successful extensions: 2640
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2152
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)