Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_T7_D09
(811 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 153 3e-38
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 151 1e-37
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 36 0.005
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 28 1.4
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 28 1.4
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 5.5
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 26 7.3
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 9.6
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 153 bits (371), Expect = 3e-38
Identities = 87/164 (53%), Positives = 104/164 (63%), Gaps = 3/164 (1%)
Frame = -2
Query: 810 KXXXAAXXXVXIENPXDVXVISSRPFGQXAVXKFA---GAHPVXRXLRDVSHQVLLLTRS 640
K AA IENP DV VISSRP+G AV KFA GA + + +TR+
Sbjct: 60 KLVLAARVIATIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTP-GNFTNYITRT 118
Query: 639 KLHSVNLRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAILCNTKSSHSIG 460
RL+IV DP D Q I EAS+VNIPVIALC+TDS L VD+AI N K SIG
Sbjct: 119 YREP---RLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIG 175
Query: 459 LMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 328
L W+LLAREVLRLRG + R W+V+ DL+FYRDPEE E++E+Q
Sbjct: 176 LAWYLLAREVLRLRGNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 151 bits (366), Expect = 1e-37
Identities = 85/166 (51%), Positives = 104/166 (62%), Gaps = 3/166 (1%)
Frame = -2
Query: 810 KXXXAAXXXVXIENPXDVXVISSRPFGQXAVXKFA---GAHPVXRXLRDVSHQVLLLTRS 640
K AA IENP DV V+S+R +G AV KFA GA + + +TR+
Sbjct: 59 KLVLAARVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTP-GNFTNYITRT 117
Query: 639 KLHSVNLRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAILCNTKSSHSIG 460
RL++V DP D Q I EAS+VNIPVIALC+TDS L VDIAI N K SIG
Sbjct: 118 YREP---RLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIG 174
Query: 459 LMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAK 322
L+W+LLAREVLR+RG L R WDV+ DL+FYRDPEE E++E+ K
Sbjct: 175 LIWYLLAREVLRVRGTLSRSAPWDVMPDLYFYRDPEEVEREEEAKK 220
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 36.3 bits (80), Expect = 0.005
Identities = 22/74 (29%), Positives = 36/74 (48%)
Frame = -2
Query: 657 LLLTRSKLHSVNLRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAILCNTK 478
L+ T K V L+++L+P ++ EA ++P I + +TD+ R V I N
Sbjct: 168 LIQTDKKPSYVFPDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDD 227
Query: 477 SSHSIGLMWWLLAR 436
S L+ LL+R
Sbjct: 228 SLRCTDLIAGLLSR 241
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 28.3 bits (60), Expect = 1.4
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = +2
Query: 371 NKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 469
N+S+T +++ SR ST RS STS AN H K E
Sbjct: 106 NRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 573 TEASYVNIPVIALCNTDSPLRFVDIAILCNTKSSHSI 463
T A + + LC+ +S RF D+A+ NTK +H I
Sbjct: 75 TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 465 IGLMWWLLAREVLRLRGVLPRDQRWD 388
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 7.3
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = -3
Query: 410 FPVTSAGML--WLICSSTVTLKKVKRM 336
FP S ++ WL +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.4 bits (53), Expect = 9.6
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -3
Query: 599 TLHKTINPLLKLHMSTFL*LLCATQTP-H*DLWTLLSYATPSLPTLLV 459
+L+K + PLL + F LL + +TP DL+T L P +LL+
Sbjct: 735 SLYKEVMPLLHALLEAFNSLLISARTPKEKDLFTELCLTIPVRLSLLL 782
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,916,725
Number of Sequences: 5004
Number of extensions: 55600
Number of successful extensions: 138
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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