Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_D05
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    39   8e-04
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    33   0.041
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.38 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   2.7  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   3.6  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   3.6  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   4.7  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   4.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 39.1 bits (87), Expect = 8e-04
 Identities = 16/28 (57%), Positives = 16/28 (57%)
 Frame = -3

Query: 813 GGXXPPPPPXXXGGGXKXXXPPPPPPPP 730
           GG  PPPPP    G      PPPPPPPP
Sbjct: 759 GGPPPPPPPPGVAGA---GPPPPPPPPP 783



 Score = 38.3 bits (85), Expect = 0.001
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -1

Query: 800 PPPPPXXGGGGXXKXXPPPPPPXXXXGXFFFFXXXP 693
           PPPPP  G  G     PPPPPP    G   ++   P
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797



 Score = 36.7 bits (81), Expect = 0.004
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = -3

Query: 810 GXXPPPPPXXXGGGXKXXXPPPPPPPPXXGXXFFFXXXP 694
           G  PPPPP     G     PPPPPP    G   ++   P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797



 Score = 30.3 bits (65), Expect = 0.38
 Identities = 14/27 (51%), Positives = 14/27 (51%)
 Frame = -3

Query: 801 PPPPPXXXGGGXKXXXPPPPPPPPXXG 721
           P PPP    GG     PPPPPPP   G
Sbjct: 750 PVPPPAPIMGGP----PPPPPPPGVAG 772



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = -1

Query: 800 PPPPPXXGGGGXXKXXPPPPPPXXXXG 720
           PPP P  GG       PPPPPP    G
Sbjct: 752 PPPAPIMGG------PPPPPPPPGVAG 772



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -3

Query: 801 PPPPPXXXGGGXKXXXPPPPPPP 733
           PPPPP    GG +   P P   P
Sbjct: 779 PPPPPAVSAGGSRYYAPAPQAEP 801


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 33.5 bits (73), Expect = 0.041
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = -3

Query: 810 GXXPPPPPXXXGGGXKXXXPPPPPPPP 730
           G  PPPPP     G +    PPPPPPP
Sbjct: 7   GNPPPPPPPP---GFEPPSQPPPPPPP 30



 Score = 32.3 bits (70), Expect = 0.095
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -1

Query: 800 PPPPPXXGGGGXXKXXPPPPPP 735
           PPPPP   G       PPPPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 5/29 (17%)
 Frame = -3

Query: 801 PPPPPXXXGGGXKXXXPP-----PPPPPP 730
           PPPPP           PP     PPPPPP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 29.5 bits (63), Expect = 0.67
 Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 7/31 (22%)
 Frame = -3

Query: 801 PPPPPXXX-------GGGXKXXXPPPPPPPP 730
           PPPPP          G G      PPPPPPP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = -1

Query: 791 PPXXGGGGXXKXXPPPPPP 735
           PP   G       PPPPPP
Sbjct: 325 PPIGNGSSNSSLPPPPPPP 343


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = -3

Query: 777 GGGXKXXXPPPPPPPPXXGXXFFFXXXPXP 688
           G       PPPPPPPP     +     P P
Sbjct: 298 GDSANGGLPPPPPPPPPSNDFWKDSNEPAP 327


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -3

Query: 798  PPPPXXXGGGXKXXXPPPPPPPP 730
            P  P           PPPPPPPP
Sbjct: 1080 PSAPVANNVSKPSAVPPPPPPPP 1102


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -3

Query: 771 GXKXXXPPPPPPPP 730
           G     PPPPPPPP
Sbjct: 939 GVMPAFPPPPPPPP 952



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 753 PPPPPPPP 730
           PPPPPPPP
Sbjct: 946 PPPPPPPP 953


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 753 PPPPPPPP 730
           PPPPPPPP
Sbjct: 189 PPPPPPPP 196



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 753 PPPPPPPP 730
           PPPPPPPP
Sbjct: 190 PPPPPPPP 197


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 753 PPPPPPPP 730
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,884,821
Number of Sequences: 5004
Number of extensions: 29101
Number of successful extensions: 301
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)