Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_C23
         (829 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual      32   0.086
SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit Rpn10|...    27   2.5  
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.2  
SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces pombe...    26   5.7  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    26   7.5  

>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 272

 Score = 32.3 bits (70), Expect = 0.086
 Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 1/104 (0%)
 Frame = -3

Query: 473 WNVEARNAAITNCYFTAAINRVGYEEFPNEFTSADGKPAHKDLGLFYGSSYFCGPDGVRC 294
           W++  +  A  NC    A NRVG +E  +                F+G S   GP G   
Sbjct: 184 WDLVTKARAFENCIPLVAANRVGTDEKLS----------------FFGHSKIIGPTGKVI 227

Query: 293 PGLSRTRDGLLIAAVDLNLNRQIRDRCCYYMTQRL-DMYVNSLS 165
             L   ++G++   VDL+  + +R     +   R+ D+Y   LS
Sbjct: 228 KALDEEKEGVISYTVDLDDAKPLRKNYYTFFEDRMPDLYKRLLS 271


>SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit
           Rpn10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 243

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 439 FVIAAFLASTFHMYSLPPSPAIVAD 513
           F+ AA  + + H+ S+PPSP +++D
Sbjct: 156 FIDAANSSDSCHLVSIPPSPQLLSD 180


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 741 LRLSLGHRKRDREASQDHIPRVGDFNESNYYMEGNTG 631
           L + L HRK + E S  H+P    + +S +Y+E + G
Sbjct: 431 LPIYLFHRKLESELS--HLPPYSPYRDSYFYLEDDDG 465


>SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 325

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
 Frame = -3

Query: 704 KHRKTTFRESAILTNPTTTWKVT---PAILYSRPDTARFAVNXCFGRHHVLNWMMFGQNG 534
           K+ +   +  A   NP+     T   P  +Y R     +A     G  H++   +FG +G
Sbjct: 34  KNGELLVKIEAAAINPSDLMNATGGFPYTVYPRIVGRDYAGTVISGASHLVGTRVFGTSG 93

Query: 533 AEIVFNPSATIA 498
           +E+ F    T A
Sbjct: 94  SELSFTKDGTHA 105


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +3

Query: 576 SEAXVHRESCRIWSRIQDGRCYLPCSSWI 662
           S    H +SC++  + +DG C++    +I
Sbjct: 434 SSLSCHSDSCKVSCQNEDGTCFISAKDYI 462


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,251,054
Number of Sequences: 5004
Number of extensions: 64980
Number of successful extensions: 192
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)