Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_T7_C23
(829 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683... 205 4e-53
02_04_0096 + 19669428-19669525,19670770-19670818,19671041-196711... 31 1.1
02_01_0487 + 3503003-3503037,3505802-3505833,3506012-3506127,350... 30 2.0
05_03_0526 + 15021174-15021363,15021743-15021843,15021893-15022033 29 4.5
06_01_0773 - 5784722-5784811,5784888-5784923,5785003-5785104,578... 29 6.0
04_03_1018 + 21753634-21753640,21754282-21754315,21754413-217544... 28 7.9
02_05_0489 - 29452520-29453104 28 7.9
>07_03_0405 -
17767303-17767665,17767815-17768039,17768115-17768342,
17768607-17768621,17768622-17768810,17769106-17769213,
17769917-17770045
Length = 418
Score = 205 bits (500), Expect = 4e-53
Identities = 105/197 (53%), Positives = 124/197 (62%)
Frame = -3
Query: 719 GNXIGKHRKTTFRESAILTNPTTTWKVTPAILYSRPDTARFAVNXCFGRHHVLNWMMFGQ 540
GN IG HRK T + + VN C+GRHH LNW+ FG
Sbjct: 215 GNIIGIHRKNHIPRVGDFNESTYYMEGNTGHPVFETAYGKIGVNICYGRHHPLNWLAFGL 274
Query: 539 NGAEIVFNPSATIAGEGGSEYMWNVEARNAAITNCYFTAAINRVGYEEFPNEFTSADGKP 360
NGAEIVFNPSAT+ GE SE MW +EARNAAI N YF +INRVG E FPN FTS DGKP
Sbjct: 275 NGAEIVFNPSATV-GEL-SEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKP 332
Query: 359 AHKDLGLFYGSSYFCGPDGVRCPGLSRTRDGLLIAAVDLNLNRQIRDRCCYYMTQRLDMY 180
H D G FYGSS+F PD P LSR RDGL+I+ +DLNL RQI+D+ + MT R D Y
Sbjct: 333 QHADFGHFYGSSHFSAPDASCTPSLSRYRDGLMISDMDLNLCRQIKDKWGFRMTARYDTY 392
Query: 179 VNSLSKVLELDYKPQVV 129
+ LS+ L+ D+KPQV+
Sbjct: 393 ASLLSEYLKPDFKPQVI 409
>02_04_0096 +
19669428-19669525,19670770-19670818,19671041-19671132,
19671235-19671386,19671478-19671524,19671617-19671650,
19671769-19671935,19672070-19672166,19672239-19672408
Length = 301
Score = 31.1 bits (67), Expect = 1.1
Identities = 34/125 (27%), Positives = 52/125 (41%), Gaps = 6/125 (4%)
Frame = -3
Query: 536 GAEIVFNPSATIAGEG-----GSEYMWNVEARNAAITNCYFTAAINRVGYEEFPNEFTSA 372
GAEI+F P+A I E S W + A N A NR+G E E
Sbjct: 176 GAEILFYPTA-IGSEPQDNNLDSREHWKRVMQGHAGANLVPLVASNRIGRETVETE---- 230
Query: 371 DGKPAHKDLGL-FYGSSYFCGPDGVRCPGLSRTRDGLLIAAVDLNLNRQIRDRCCYYMTQ 195
H + + F+G+S+ GP G + + +L+A DL+ + R + +
Sbjct: 231 -----HGESTITFFGNSFIAGPTGEIVKLANDKDEDVLVAEFDLDEIKSTRHGWGIFRDR 285
Query: 194 RLDMY 180
R D+Y
Sbjct: 286 RPDLY 290
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 696 QDHIPRVGDFNESNYYMEGNTGHPVFATRYGKI 598
+ HIP + E Y+ G+TG F T+Y I
Sbjct: 123 KSHIPDGPGYQEKFYFNPGDTGFKAFKTKYATI 155
>02_01_0487 +
3503003-3503037,3505802-3505833,3506012-3506127,
3506227-3506437,3506555-3506792,3507075-3507252,
3507962-3508079,3508167-3508373,3509134-3509234
Length = 411
Score = 30.3 bits (65), Expect = 2.0
Identities = 21/64 (32%), Positives = 32/64 (50%)
Frame = -3
Query: 521 FNPSATIAGEGGSEYMWNVEARNAAITNCYFTAAINRVGYEEFPNEFTSADGKPAHKDLG 342
F+PS I GEGG ++ + RN + + +R G +EF NE A +H++L
Sbjct: 45 FSPSNKI-GEGGFGSVYKGKLRNGKLVAVKVLSLESRQGAKEFLNEL-MAISNVSHENLV 102
Query: 341 LFYG 330
YG
Sbjct: 103 KLYG 106
>05_03_0526 + 15021174-15021363,15021743-15021843,15021893-15022033
Length = 143
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = -2
Query: 255 GRGLEPEQTDQRQMLLLHDPTPGHVREQSQQSTRAGLQ 142
G+G EP+ D +++L ++D PG E Q S+ AGL+
Sbjct: 89 GKGHEPDWRDLQELLRIYD--PGTSTECKQASSGAGLR 124
>06_01_0773 -
5784722-5784811,5784888-5784923,5785003-5785104,
5785154-5785213,5785988-5786068,5786069-5786113,
5786870-5786944,5787383-5787445,5787531-5787971
Length = 330
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 693 LAMLPDXVSGVLMTTAVFQVCPNASRXFLIS 785
LA+ PD V+ L T VF VC +++ L+S
Sbjct: 92 LALAPDEVARALTGTPVFTVCNSSNEFVLVS 122
>04_03_1018 +
21753634-21753640,21754282-21754315,21754413-21754432,
21754485-21755782
Length = 452
Score = 28.3 bits (60), Expect = 7.9
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +3
Query: 264 QAVSGAGQTGAPNAVGAAEVARSVEQAQVFVCRFPVSRSELVRELLVADSVDGRCEVAV 440
+ SG P+A+ A E + E ++ V R P LVR + + +S + E AV
Sbjct: 342 KCASGGCAGAVPSALAAVEALAASEAGRMAVARAPGGTRALVRHVFMMNSSNDGSEHAV 400
>02_05_0489 - 29452520-29453104
Length = 194
Score = 28.3 bits (60), Expect = 7.9
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +1
Query: 457 LASTFHMYSLPP--SPAIVADGLKTISAPFCPNIIQFKTWCRPKXMFTANLAVSGREYR 627
L S+F ++ L P +PA + ++AP NI + RP+ A L+++GR R
Sbjct: 98 LPSSFLLHLLEPYRAPASPSSSSSPVAAPLQKNISCIQPSVRPELFAIAALSLTGRHRR 156
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,317,436
Number of Sequences: 37544
Number of extensions: 475447
Number of successful extensions: 1414
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1412
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -