Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_T7_C21
(807 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0302 - 2021221-2023305 33 0.35
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 32 0.47
09_06_0374 + 22649455-22650024,22650085-22650637,22650812-226511... 30 1.9
01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333... 30 2.5
12_01_0302 - 2286171-2286341,2286747-2286968 29 4.4
11_02_0038 - 7631462-7634428,7635975-7636250 29 4.4
09_04_0042 - 14055885-14056142,14057508-14057774,14057859-140592... 29 4.4
11_06_0610 - 25449085-25453284 28 7.6
>02_01_0302 - 2021221-2023305
Length = 694
Score = 32.7 bits (71), Expect = 0.35
Identities = 24/73 (32%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Frame = -1
Query: 708 PPSPAXXGTSTRSSNPRFHTPTTPRLNIHFHQSPDAVXEGVRAGVKPPXSSEAPSAYLT- 532
PPS + T S P FH P TP N S + G G PP +S P L
Sbjct: 618 PPSHSHPSTPPSPSGPSFHPPPTPH-NCS-PPSHGSSTGGGHGGGHPPSTSTPPGGKLPF 675
Query: 531 PSSLGMAKGVSPP 493
P G++ PP
Sbjct: 676 PPVYGVSYASPPP 688
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 32.3 bits (70), Expect = 0.47
Identities = 19/73 (26%), Positives = 32/73 (43%)
Frame = -1
Query: 708 PPSPAXXGTSTRSSNPRFHTPTTPRLNIHFHQSPDAVXEGVRAGVKPPXSSEAPSAYLTP 529
P SP+ +S + S ++P++PRL+ + SP+ P S+ +Y
Sbjct: 1741 PTSPSYNPSSAKYSPSHAYSPSSPRLSPYSQTSPNYSPTSPTYSPTSPSYSQPSPSYSPT 1800
Query: 528 SSLGMAKGVSPPY 490
S + G SP Y
Sbjct: 1801 SPYTTSGGPSPDY 1813
>09_06_0374 +
22649455-22650024,22650085-22650637,22650812-22651147,
22651171-22652605,22652939-22653062
Length = 1005
Score = 30.3 bits (65), Expect = 1.9
Identities = 22/63 (34%), Positives = 29/63 (46%)
Frame = -1
Query: 708 PPSPAXXGTSTRSSNPRFHTPTTPRLNIHFHQSPDAVXEGVRAGVKPPXSSEAPSAYLTP 529
PPSP G + R+SN R P +P + EG R +PP S P A +P
Sbjct: 339 PPSPPRGGGAARASNRR------PE-----GAAPTSQPEGERKKKRPPRSHRVPPAIPSP 387
Query: 528 SSL 520
+SL
Sbjct: 388 ASL 390
>01_01_0448 -
3332238-3332330,3332414-3332481,3332570-3332618,
3332716-3332798,3332900-3333023,3333389-3333486,
3333555-3333634,3333712-3333782,3333872-3333953,
3334158-3334237,3334365-3334416,3334843-3334958
Length = 331
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 696 AXXGTSTRSSNPRFHTPTTPRLNIHFHQS 610
A T+TR S PR H PTTP ++ +S
Sbjct: 2 AASSTATRLSPPRLHAPTTPSPHLPLRRS 30
>12_01_0302 - 2286171-2286341,2286747-2286968
Length = 130
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 83 RLQRSRKKHGEDLPTGGRSRRKGEKLE*MQREEQ 184
RL+R RK + D+ G + +GEKLE + +E+
Sbjct: 57 RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90
>11_02_0038 - 7631462-7634428,7635975-7636250
Length = 1080
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = -2
Query: 257 CYFSTPPFDTVSYDNIRTVLKDNKTALLSASIQASLPSSETYRQLVDPRHVSSDSF 90
CYF P + ++ +R + NKT +LS+ ++ T + P ++ SD F
Sbjct: 585 CYFDQLPLEPTTWSKLRRISIVNKTDMLSSVVEKGHCRVRTLMFCMSP-NIDSDVF 639
>09_04_0042 - 14055885-14056142,14057508-14057774,14057859-14059292,
14059378-14059539,14059642-14059768,14059869-14060200,
14060289-14061083,14061379-14061714,14061791-14062730,
14063338-14063588
Length = 1633
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = -2
Query: 266 DPSCYFSTPPFDTVSYDNIRTVLKDNKTALLSASIQASLPSSETYRQL 123
+PS + PP S+D+I + + T LL AS+ S S +++R L
Sbjct: 1171 NPSYSKAIPPVRIHSFDSIFRLHQRESTGLLPASLHLSSKSVDSFRDL 1218
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/60 (25%), Positives = 20/60 (33%)
Frame = -1
Query: 723 PLXXKPPSPAXXGTSTRSSNPRFHTPTTPRLNIHFHQSPDAVXEGVRAGVKPPXSSEAPS 544
P PP+P +S P HTP+ P +SP + P PS
Sbjct: 613 PAEKSPPTPESKASSPPPPAPEGHTPSPPESTPPSEKSPPTPESKASSPPPPTPEGHTPS 672
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/60 (25%), Positives = 21/60 (35%)
Frame = -1
Query: 723 PLXXKPPSPAXXGTSTRSSNPRFHTPTTPRLNIHFHQSPDAVXEGVRAGVKPPXSSEAPS 544
P PP+P +S P HTP+ P+ +SP + P PS
Sbjct: 646 PSEKSPPTPESKASSPPPPTPEGHTPSPPKSTPPTEKSPPTPESESSSPPPPAPEGHMPS 705
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,377,019
Number of Sequences: 37544
Number of extensions: 444225
Number of successful extensions: 1383
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1376
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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