Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_C20
         (795 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase |S...    27   3.1  
SPAP8A3.07c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Schi...    26   5.4  
SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5 |Schi...    25   9.4  
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    25   9.4  

>SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 105 VYLIWMFLLDKFVFDKAQCTRRMRNA 28
           VYLIW+   D FV  K +  R +RNA
Sbjct: 63  VYLIWLIYDDGFVTGKDRQKRWLRNA 88


>SPAP8A3.07c |||phospho-2-dehydro-3-deoxyheptonate aldolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = +2

Query: 305 FCPLNQVILGLGCPLTRHGSTTLFADVVHVGAIGDHDARLQREQLSAFRELSSAI 469
           +C +    + L   +  + S   FAD++  GAIG   AR    QL   REL+SA+
Sbjct: 142 YCDVTNFGIPLASEMLDNISPQFFADLLSFGAIG---ARTTESQL--HRELASAL 191


>SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 173

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 458 SSAIFLRMTM-YHLYCRPQCWLAQSW 532
           SSA   RM+M ++ Y    C+LA+SW
Sbjct: 22  SSAATCRMSMLWNWYIHDSCFLAKSW 47


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 245 PPSSGATWTSTLAKPKTLSARRRLKHSSTPLN 150
           P  S   W +TL KP+++    R    S+P+N
Sbjct: 885 PHWSEHIWLTTLKKPQSIHVSGRFPQVSSPVN 916


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,852,888
Number of Sequences: 5004
Number of extensions: 53572
Number of successful extensions: 139
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)