Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_T7_C13
(806 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 177 2e-45
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 34 0.027
SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 29 1.0
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 29 1.0
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo... 28 1.8
SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces po... 27 3.1
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 27 4.1
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 26 5.5
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 7.2
SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 7.2
SPAC15F9.01c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 7.2
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 26 7.2
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo... 26 7.2
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ... 26 7.2
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 25 9.6
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 25 9.6
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 25 9.6
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 25 9.6
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 177 bits (431), Expect = 2e-45
Identities = 75/118 (63%), Positives = 102/118 (86%)
Frame = -1
Query: 689 NHQDETYXRRVIKPXEGLLIAHKRIFIKDSAVNAVCYGAKVLLPGILRYEDGIEVDQEIV 510
N +DE+Y RRVI+P E LL+ +KRI +KDSAVNA+CYGAK+++PG+LRYE GIEV++EIV
Sbjct: 250 NTRDESYLRRVIRPLESLLVGYKRIVVKDSAVNAICYGAKLMIPGLLRYEAGIEVNEEIV 309
Query: 509 IVTTKGEAVALAVALMTTSTMASCDHGVAAKLKRVIMERDTYPRKWGLGPKASQKKIL 336
++TTKGEA+A+ +A M+T +++CDHGV AK+KR IMERD YPR+WGLGP++ +KK L
Sbjct: 310 LITTKGEAIAVGIAQMSTVELSTCDHGVVAKVKRCIMERDVYPRRWGLGPQSMKKKTL 367
Score = 54.8 bits (126), Expect = 1e-08
Identities = 20/33 (60%), Positives = 28/33 (84%)
Frame = -2
Query: 349 RKKSSYKQGKLDKYGKPNENTPKEWLNSYVNYN 251
+KK+ K+GKLDKYG+PNENTP +W SY++Y+
Sbjct: 363 KKKTLKKEGKLDKYGRPNENTPADWSKSYIDYS 395
Score = 25.4 bits (53), Expect = 9.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 804 MLGFGXQMIEFKRVRSGIQGEKE 736
+LG G M E +RVRSG E +
Sbjct: 211 LLGVGGHMQELRRVRSGCLSEND 233
Score = 25.4 bits (53), Expect = 9.6
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2
Query: 733 MVTMHDIXDAPXSYETTK 680
+VTMHD+ DA Y+ T+
Sbjct: 235 IVTMHDVLDAQWIYDNTR 252
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 33.9 bits (74), Expect = 0.027
Identities = 26/116 (22%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Frame = -2
Query: 364 DRKPHRKKSSYKQGKLDKYGKPNENTPKEWLNSYVNYNVKKEPENGDGVEEGSRKRTAST 185
D + +S + K D E++ +E +S + + ++E E+ + E +K+ +
Sbjct: 18 DSSEENRLTSSRLKKQDDSSSEEESSEEESASSSESESSEEESESEESEVEVPKKK--AV 75
Query: 184 ANAEDPDVSIEVKQEXXXXXXKRDSEAPAEADATMDT---SESPETAEQPADDSVR 26
A +ED + E +E + DSE E+++ ++ SE +E+ +D+S R
Sbjct: 76 AASEDSESDSESSEEEEETESEEDSEVSDESESESESESESEEESESEEESDESER 131
>SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 28.7 bits (61), Expect = 1.0
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +2
Query: 236 RFFLNIIVD-VTV*PFFWCVLIWFA-IFVKFPLFV*GFFSVRLSVRDPIFWGTCLVPL*H 409
RF+L+ D + + P W ++ + +F + P F+ +R RDP+ W L+ H
Sbjct: 62 RFYLSTYEDPILLIPAPWKTALFSSELFFQVPFFIWVSLRLRKKARDPVLWVAILIYGVH 121
Query: 410 A 412
A
Sbjct: 122 A 122
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 28.7 bits (61), Expect = 1.0
Identities = 15/65 (23%), Positives = 29/65 (44%)
Frame = -2
Query: 235 ENGDGVEEGSRKRTASTANAEDPDVSIEVKQEXXXXXXKRDSEAPAEADATMDTSESPET 56
E + VE+ K+ S+ ++ D + S + E DSE+ + ++ P +
Sbjct: 186 EEEEVVEKTEEKKEGSSESSSDSESSSDSSSESGDSDSSSDSESESSSEDEKKRKAEPAS 245
Query: 55 AEQPA 41
E+PA
Sbjct: 246 EERPA 250
>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 572
Score = 27.9 bits (59), Expect = 1.8
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = -2
Query: 349 RKKSSYKQGKLDKYGKPNENTPKEWLNSYVNYNVKKEPENGDGVEEGSRKRTASTANAED 170
++ SY+ K + + PK + N+ N+KK +GD + R A+ A+A D
Sbjct: 256 KESKSYENSKALNSAEGKD--PKAFFNTDDEDNMKKSSSHGDSEVVEASDRYANQADAAD 313
Query: 169 PDVSIEVKQ 143
+V KQ
Sbjct: 314 AEVDNIEKQ 322
>SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 380
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/43 (25%), Positives = 26/43 (60%)
Frame = -2
Query: 328 QGKLDKYGKPNENTPKEWLNSYVNYNVKKEPENGDGVEEGSRK 200
QG+LD + KP ++PK+ +++ + K++ ++ G E ++
Sbjct: 338 QGRLDSFFKPVPSSPKKPVDTKSKGSAKRKRDSNKGGESKKKR 380
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 26.6 bits (56), Expect = 4.1
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = +1
Query: 391 SRSIMTRLSFAATP*SH-EAIVDVVIRATANATASPLVVTITISWSTSMPS--SYLKIPG 561
S +T +S +T ++ + VD+ TA++T T+S+ST +P+ S L P
Sbjct: 213 SSETLTSVSITSTESAYTSSSVDIAASTTASSTLPVSTSEATVSFSTDIPATPSTLSSPA 272
Query: 562 NS 567
+S
Sbjct: 273 SS 274
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 26.2 bits (55), Expect = 5.5
Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 9/99 (9%)
Frame = -2
Query: 319 LDKYGKP--NENTPKEWLNSYVNYNV-------KKEPENGDGVEEGSRKRTASTANAEDP 167
+D+YG+P + KE Y N E + + V S K T S ++
Sbjct: 65 VDRYGRPLNQDKATKEIDRLYELENEGSSSSSESSEITDNEEVASASSKSTKSEELTDEE 124
Query: 166 DVSIEVKQEXXXXXXKRDSEAPAEADATMDTSESPETAE 50
EV SE+ E+DA +T PE +E
Sbjct: 125 SEDEEVYDPARGEGIISTSESSDESDAESETEAQPEISE 163
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 379 ENGVSDRKPHRKKSSYKQGKLDKYGKPNENTPKE 278
+N S+RKP ++ K K Y P+E T K+
Sbjct: 923 KNDTSNRKPFGAENQSKLKKNSFYDNPSETTEKD 956
>SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 76
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 277 ILLVCSHLVCHICQVSLVC 333
I LVC L C +C VS++C
Sbjct: 26 IFLVCYPLYCVVCFVSVLC 44
>SPAC15F9.01c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 227
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 397 NETRTPENGVSDRKPHRKKSSYKQGK 320
++T+T + VSD K KKS +K GK
Sbjct: 30 SDTKTLYSSVSDSKIGHKKSFHKDGK 55
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.8 bits (54), Expect = 7.2
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Frame = -2
Query: 244 KEPENGDGVEEGSRKRTASTANAEDPDVSIEVKQEXXXXXXKRDSEAPAEADA----TMD 77
KE E DG+++ S + + + E P+ ++++EA E A +
Sbjct: 282 KESETIDGIDDKSLRSSTREVSVESPNEDSVNDDSSSDVSDEKETEAKHEIRAPAIIVRE 341
Query: 76 TSESPETAEQPADDS 32
TS P TA +D+
Sbjct: 342 TSSHPSTAVPSENDT 356
>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
Pik3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 801
Score = 25.8 bits (54), Expect = 7.2
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -2
Query: 367 SDRKPHRKKSSYKQGKLDKYGKPNENTPKEWLNSYVNYNVKKE 239
++ K R S + G LDK KPN KE L S ++Y +E
Sbjct: 240 AELKHRRLVRSQRNGPLDKDLKPNSKIRKE-LESILSYPPSEE 281
>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -2
Query: 388 RTPENGVSDRKPHRKKSSYKQGKLDKYGK 302
RTPE D+K + KK ++ K +GK
Sbjct: 570 RTPEEIARDKKKYGKKKRLREWKKQVFGK 598
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 25.4 bits (53), Expect = 9.6
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -2
Query: 271 NSYVNYNVKKEPENGDGVEEGSRKRTASTANAEDPDV 161
N YV+ N E +GD + E R R + ++ D+
Sbjct: 3 NEYVDMNSSSEDSDGDSILEEGRLRPSFRGQQKERDM 39
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 25.4 bits (53), Expect = 9.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 290 VLIWFAIFVKFPLFV*GFFSVRLSVRDPI 376
V+IW +F F +F + LS+RDPI
Sbjct: 687 VIIWVCVFTC--KFAESYFFLTLSIRDPI 713
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 25.4 bits (53), Expect = 9.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 296 IWFAIFVKFPLFV*GFFSVRLSVRDPI 376
+W +F+ FV ++ + LSVRDPI
Sbjct: 599 LWITVFIA--KFVESYYFLTLSVRDPI 623
>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1205
Score = 25.4 bits (53), Expect = 9.6
Identities = 12/54 (22%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = -2
Query: 367 SDRKPHRKKSSYKQGKLDKYGKPNENTPKEWLNSY--VNYNVKKEPENGDGVEE 212
SD+K R++ + K+ KL++ N P+ + + + N + P + + + E
Sbjct: 1136 SDKKSSRRRKNEKRRKLNEQNPNIRNVPERSSSRFQGIRINYSEAPSSSEEISE 1189
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,847,955
Number of Sequences: 5004
Number of extensions: 54333
Number of successful extensions: 192
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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