Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_T7_C13
(806 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1408 - 26353389-26355191 175 3e-44
03_03_0094 + 14378953-14380728 173 1e-43
05_06_0212 + 26410330-26410419,26410562-26410846,26411005-264112... 34 0.12
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713... 31 1.1
04_04_0876 - 29005543-29005630,29005841-29006596,29006939-29006955 30 2.5
12_01_0400 + 3169597-3170504,3170510-3171269 29 3.3
02_04_0562 - 23886272-23886357,23886456-23886571,23887045-238871... 29 3.3
04_04_1107 - 30954647-30954769,30955052-30955141,30955309-309556... 29 5.8
04_04_1098 + 30876785-30876835,30876846-30877171,30877396-308774... 29 5.8
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582... 28 7.6
>07_03_1408 - 26353389-26355191
Length = 600
Score = 175 bits (427), Expect = 3e-44
Identities = 72/119 (60%), Positives = 102/119 (85%)
Frame = -1
Query: 689 NHQDETYXRRVIKPXEGLLIAHKRIFIKDSAVNAVCYGAKVLLPGILRYEDGIEVDQEIV 510
N+ DETY RR++ P E LL ++KR+ +KDSAVNA+CYGAK+++PG+LR+E+ I+V +E+V
Sbjct: 289 NYNDETYLRRIVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIDVGEEVV 348
Query: 509 IVTTKGEAVALAVALMTTSTMASCDHGVAAKLKRVIMERDTYPRKWGLGPKASQKKILI 333
++TTKGEA+A+ +A MTT+ MA+CDHG AK+KRV+M+RDTYPRKWGLGP A +KK ++
Sbjct: 349 LMTTKGEAIAIGIAEMTTAVMATCDHGAVAKIKRVVMDRDTYPRKWGLGPVALKKKKMV 407
Score = 42.3 bits (95), Expect = 4e-04
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 1/103 (0%)
Frame = -2
Query: 349 RKKSSYKQGKLDKYGKPNENTPKEWLNSYVNYNVKKEPENGDG-VEEGSRKRTASTANAE 173
+KK +G LDK+GKPNE TP EW+ NV P GD + + + AE
Sbjct: 402 KKKKMVAEGLLDKHGKPNEKTPAEWIR-----NVAL-PTGGDAMIASIAAAPEEAKVKAE 455
Query: 172 DPDVSIEVKQEXXXXXXKRDSEAPAEADATMDTSESPETAEQP 44
V+ E +E +D E A+ + +A P
Sbjct: 456 QDVVATEEVKEKKKKKKHKDEEDAADEGRKRKIEDDDASASVP 498
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = -3
Query: 804 MLGFGXQMIEFKRVRSGIQGEKE 736
+LG G M E +RVRSGI GE++
Sbjct: 250 LLGVGAHMQELRRVRSGILGEQD 272
>03_03_0094 + 14378953-14380728
Length = 591
Score = 173 bits (422), Expect = 1e-43
Identities = 72/119 (60%), Positives = 101/119 (84%)
Frame = -1
Query: 689 NHQDETYXRRVIKPXEGLLIAHKRIFIKDSAVNAVCYGAKVLLPGILRYEDGIEVDQEIV 510
N DE+Y RR++ P E LL ++KR+ +KDSAVNA+CYGAK+++PG+LR+E+ IEV +E+V
Sbjct: 293 NFNDESYLRRIVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENEIEVGEEVV 352
Query: 509 IVTTKGEAVALAVALMTTSTMASCDHGVAAKLKRVIMERDTYPRKWGLGPKASQKKILI 333
++TTKGEA+A+ +A MTT+ MA+CDHG AK+KRV+M+RDTYPRKWGLGP A +KK ++
Sbjct: 353 LMTTKGEAIAIGIAEMTTAVMATCDHGAVAKIKRVVMDRDTYPRKWGLGPVALKKKKMV 411
Score = 43.6 bits (98), Expect = 2e-04
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = -2
Query: 349 RKKSSYKQGKLDKYGKPNENTPKEWLNSYVNYNVKKEPENGDGVEEG--SRKRTASTANA 176
+KK +G LDK+GKPNE TP EWL + V P GD + G +
Sbjct: 406 KKKKMVAEGLLDKHGKPNEKTPSEWLRNAV------LPAGGDAMIAGIAAAPEPEKPKVK 459
Query: 175 EDPDVSIEVKQE 140
E+ DV+ E K++
Sbjct: 460 EEADVAEETKEK 471
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -3
Query: 804 MLGFGXQMIEFKRVRSGIQGEKE 736
+LG G M E +RVRSGI GE +
Sbjct: 254 LLGVGAHMQELRRVRSGILGETD 276
>05_06_0212 +
26410330-26410419,26410562-26410846,26411005-26411208,
26411636-26411692,26411859-26412926
Length = 567
Score = 34.3 bits (75), Expect = 0.12
Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 5/122 (4%)
Frame = -2
Query: 400 WNETRTPENG-VSDRKPHRKKSSY----KQGKLDKYGKPNENTPKEWLNSYVNYNVKKEP 236
W P+ V+D KPH +K+SY + GKL + + + P E + + +K
Sbjct: 248 WRPISHPKRAAVTDAKPHTRKASYAMETESGKLKRNSRRSSAAPVESSQTNIAMETEKSR 307
Query: 235 ENGDGVEEGSRKRTASTANAEDPDVSIEVKQEXXXXXXKRDSEAPAEADATMDTSESPET 56
N RK T+STA++ E+++ +S A A +T T E PE
Sbjct: 308 RN-------PRKFTSSTADSVPESQLTELEKVKRNLRKVTNSMAEASKVSTPAT-EIPER 359
Query: 55 AE 50
E
Sbjct: 360 QE 361
>06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,
7139996-7140076,7140805-7140895,7141242-7141330,
7141749-7141802,7141906-7142085,7142175-7142237,
7142575-7142705,7142807-7142900,7143343-7143684,
7143957-7144348,7145010-7148487,7149101-7149187,
7149324-7149367,7149495-7149591,7150429-7150572
Length = 1873
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = -2
Query: 244 KEPENGDGVEEGSRKRTASTANAEDPDVSIEVKQEXXXXXXKRDSEAPAEADATMDTS-E 68
K PE+ E+ S K A T EDP V++E + E + S P + +A ++ E
Sbjct: 1164 KLPEDSTTFEKPSEKDDAGTKQTEDP-VTLEKEPE-----EDKGSVEPTQDNAGLEKPLE 1217
Query: 67 SPETAEQPADDSV 29
E + +P++DSV
Sbjct: 1218 EDEASAKPSEDSV 1230
>04_04_0876 - 29005543-29005630,29005841-29006596,29006939-29006955
Length = 286
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -3
Query: 804 MLGFGXQMIEFKRVRSGIQGEKE 736
+LG G M E RVRSGI GE++
Sbjct: 224 LLGVGAHMQELHRVRSGIHGEQD 246
>12_01_0400 + 3169597-3170504,3170510-3171269
Length = 555
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 349 CEAFGPRPHFLGYVSRSIMTRLSFAATP 432
CEA P H Y +R + R+S AATP
Sbjct: 212 CEATSPVDHLAYYFARGLKLRISGAATP 239
>02_04_0562 -
23886272-23886357,23886456-23886571,23887045-23887127,
23887683-23887829,23887946-23887993,23888166-23888384,
23889370-23889541,23889636-23889700,23890386-23890512,
23891358-23891450,23891520-23891629,23891722-23891868,
23892161-23892473,23892580-23893178
Length = 774
Score = 29.5 bits (63), Expect = 3.3
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = -2
Query: 199 RTASTANAEDPDVSIEVKQEXXXXXXKRDSEA-PAEADATMD--TSESPETAEQPADDSV 29
RTASTA A P + IE +Q KR EA P E D ++ +S + + +SV
Sbjct: 112 RTASTATAGQPKLDIEDEQSEDQKQNKRKKEASPEECDQAVEGLSSAKAKAKAKQVQESV 171
Query: 28 R 26
+
Sbjct: 172 K 172
>04_04_1107 -
30954647-30954769,30955052-30955141,30955309-30955617,
30955732-30955842,30955945-30956379,30956452-30956610,
30957044-30957994,30959016-30959483
Length = 881
Score = 28.7 bits (61), Expect = 5.8
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Frame = -2
Query: 397 NETRTPENGVSDRKPHRKKSSYKQGKLDKYGKPNENTPKEWLNSYVNYNVKKEPE---NG 227
+E + + G + P RK+SS G+ + K ++P E L + + K+PE N
Sbjct: 309 SELKKAQAGKTIGCPKRKRSSKNAGENKRKNKGFPSSPNEGLYLRRSKRLTKQPEQPIND 368
Query: 226 DGVEEGSRKRTASTANAEDPDV 161
D V++ + + + N++ PD+
Sbjct: 369 DPVQQPA--ASPNQYNSDPPDI 388
>04_04_1098 +
30876785-30876835,30876846-30877171,30877396-30877418,
30877687-30879392
Length = 701
Score = 28.7 bits (61), Expect = 5.8
Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 10/129 (7%)
Frame = -2
Query: 388 RTPENGVSDRKPHRK---KSSYK-QGKLDK--YGKPNENTPKEWLNSYVNYNVKKEPENG 227
+ P N + D KP K K Y + + D Y K +N PK + +S KE E
Sbjct: 490 KIPYNDLKDDKPSSKVVRKDRYSDESETDSETYVKKKKNLPKSYHHSDKPAQRGKEKEEN 549
Query: 226 DGVEEGSRKR----TASTANAEDPDVSIEVKQEXXXXXXKRDSEAPAEADATMDTSESPE 59
G RKR + S ++A + ++ + KR + +E+ + D S S +
Sbjct: 550 SGKNVDKRKRHDTDSDSDSHARERKRHLDARAS-LAAQKKRSVTSSSESSESSDYSSSSD 608
Query: 58 TAEQPADDS 32
+ + DS
Sbjct: 609 SESDVSSDS 617
>02_01_0782 +
5827364-5827441,5827733-5827787,5828761-5828849,
5829167-5829191,5829645-5829683,5830316-5830433,
5830857-5831023,5831155-5831518,5831589-5831701,
5832185-5832310,5832436-5833339,5833694-5834036
Length = 806
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -2
Query: 397 NETRTPENGVSDRKPHRKKSSYKQGKLDKYGKPNENTPKE 278
+E+ EN RK H KKSS ++ K +Y + E
Sbjct: 203 DESSDEENNEGKRKRHHKKSSRRRRKKKRYSSSESESSSE 242
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,079,677
Number of Sequences: 37544
Number of extensions: 368631
Number of successful extensions: 1126
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -