Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_T7_C09
(790 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 178 6e-46
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc... 132 4e-32
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc... 47 4e-06
SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase S... 27 3.1
SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|c... 27 4.0
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce... 26 5.4
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ... 26 5.4
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 26 5.4
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 26 7.1
SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces... 25 9.4
SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyc... 25 9.4
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb... 25 9.4
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 178 bits (434), Expect = 6e-46
Identities = 85/195 (43%), Positives = 125/195 (64%), Gaps = 1/195 (0%)
Frame = -1
Query: 667 VVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMRYRTTKDISLPFRVIPLVREVGRTK 488
V+++DCQFHQCV+L +FE EH I+FIPPDGE ELM YR+ ++I++PFR++P+V ++ + K
Sbjct: 254 VILEDCQFHQCVRLPEFENEHRITFIPPDGEVELMSYRSHENINIPFRIVPIVEQLSKQK 313
Query: 487 MEVKVVLKSNFKPSLLGQKIEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAG 308
+ ++ +++++ P L + +IP P N +GKA Y+ SEN I WKI R G
Sbjct: 314 IIYRISIRADY-PHKLSSSLNFRIPVPTNVVKANPRVNRGKAGYEPSENIINWKIPRFLG 372
Query: 307 MKETQLSAEIELLETDTKKKWTRPPISMGFEV-PFAPSGFKVRYLKVFEPKLNYSDHDVI 131
E AE+EL T ++ W +PPIS+ F + F SG V+YL+V EP + S + I
Sbjct: 373 ETELIFYAEVELSNTTNQQIWAKPPISLDFNILMFTSSGLHVQYLRVSEP--SNSKYKSI 430
Query: 130 KWVRYIGRSGLYETR 86
KWVRY R+G E R
Sbjct: 431 KWVRYSTRAGTCEIR 445
>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 132 bits (320), Expect = 4e-32
Identities = 70/193 (36%), Positives = 113/193 (58%), Gaps = 4/193 (2%)
Frame = -1
Query: 667 VVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMRYRTTKDISLPFRVIPLVREV-GRT 491
V ++D +FHQCV+L++FE + +ISFIPPDGEF+LM YR + ++ P + V +
Sbjct: 231 VEMEDVKFHQCVRLARFENDRTISFIPPDGEFDLMSYRMSSNVR-PLIWVECESIVHSGS 289
Query: 490 KMEVKVVLKSNFKPSLLGQKIEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMA 311
++E V K+ FK + +++ IP P + + G +Y + A+VW IK+ A
Sbjct: 290 RIEFMVKAKAQFKKRCIANNVQIIIPVPEDADSPRFQTSNGHVQYAPEQAAMVWNIKKFA 349
Query: 310 GMKETQLSAEIEL--LETDTKKKWTRPPISMGFEVP-FAPSGFKVRYLKVFEPKLNYSDH 140
G KE + AE+ L ++ + + + P+ + F +P F SG +VRYLK+ EPKLNY
Sbjct: 350 GGKEFFMRAEMGLPSVKNEDIQVQKKRPVQLKFAIPYFTTSGIQVRYLKITEPKLNY--- 406
Query: 139 DVIKWVRYIGRSG 101
+ WVRY+ ++G
Sbjct: 407 HAMPWVRYVTQNG 419
>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 425
Score = 46.8 bits (106), Expect = 4e-06
Identities = 37/127 (29%), Positives = 68/127 (53%), Gaps = 5/127 (3%)
Frame = -1
Query: 676 KPVVVIDDCQFHQCVKLSKFETE-HSISFIPPDGEFELMRYRTTKDISLPFRVIPLVREV 500
+P + + +FHQ V L +++ I FIPPDG+F L ++T D + + +P+V E
Sbjct: 222 RPGTKLGNVRFHQSVNLKRWKQHPDQIEFIPPDGKFTLASFQT--DFATQ-KSLPVVVE- 277
Query: 499 GRTKME--VKVVLKSNFKPSLLGQKIEVKIPTPLNTSGV-QLICLKGKAKYKASENAIV- 332
+ K++ +V +++ K S+ KI + IP L + V + + +KY E I+
Sbjct: 278 AKNKLDGRFEVRIRNTGKKSVENLKILITIPQALKSVTVTEGNYIFRASKYTHMEEGILE 337
Query: 331 WKIKRMA 311
W +K++A
Sbjct: 338 WSVKKLA 344
>SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase
Srb10 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 352
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -1
Query: 322 KRMAGMKETQLSAEIELLETDTKKKWTRPPISMGFEVPFAPSGFKVRY 179
K++ + TQ+ +ELL T T+++W P + + S F+VRY
Sbjct: 229 KKVVPFQSTQMLRIMELLGTPTEERW---PGLKNYPEYYQLSSFEVRY 273
>SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 357
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 451 PSLLGQKIEVKIPTPLNTSGVQLICLK 371
PS+L IE + T +G+Q+IC+K
Sbjct: 242 PSILSSSIETFLRTLKRETGLQVICIK 268
>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 498
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 393 PLVFSGVGIFTSIFCPSREGLKLLF 467
P+V SG G+ ++CP++ G L+F
Sbjct: 162 PVVSSG-GVMADLWCPAQRGTALIF 185
>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 495
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 214 VPFAPSGFKVRYLKVFEPKLNYSDHDVIKW 125
VP+ + + YLK+F K N S D+ +W
Sbjct: 206 VPYFSTAWFQFYLKLFSQKDNVSSSDLTRW 235
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/48 (25%), Positives = 22/48 (45%)
Frame = +2
Query: 620 LAQLHALVELTVVNDHYWLPXRAGSLSVLPDMPPXPFPGFITNLSLIP 763
+ QL +L+ + Y+ S+ + MPP P+P I ++P
Sbjct: 418 IQQLQFKYQLSGSLEPYYAAQGTDSILGMTTMPPTPYPALINPCKILP 465
>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 25.8 bits (54), Expect = 7.1
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -1
Query: 628 LSKFETEHSISFIPPDGEFELMRYRTTKDISLPFRV 521
L KF+TE + D L Y +KDIS FRV
Sbjct: 409 LFKFDTEDEVVAWANDSPVGLAGYLFSKDISRVFRV 444
>SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = +2
Query: 137 VMVRVIQFRFKHLQIADLESGGCKGNFEP 223
+ R++ R H I +E CK +EP
Sbjct: 53 IFARILDARAGHFSITPIEQTSCKQMYEP 81
>SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 25.4 bits (53), Expect = 9.4
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = -1
Query: 415 PTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDT 257
P L+ + VQL+ L + Y ASEN + K +R+A + A+ +L + T
Sbjct: 229 PKKLSANDVQLLVLAIQKFYNASENTPLGK-ERLALLAAFSKGADFDLHKVAT 280
>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 730
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 131 DDVMVRVIQFRFKHLQIADLESGGCKGNFEPHGD 232
DD ++ +I+ +F+HL + + GG G+ GD
Sbjct: 149 DDALLLMIEHKFRHLPV--VSDGGPDGSAGDEGD 180
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,260,559
Number of Sequences: 5004
Number of extensions: 67537
Number of successful extensions: 220
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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