Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_T7_C09
(790 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L26290-1|AAA27981.1| 441|Caenorhabditis elegans clathrin-associ... 369 e-102
AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : short... 369 e-102
AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : short... 369 e-102
AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin, mu/m... 145 3e-35
Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical pr... 143 1e-34
L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein ( Caeno... 142 3e-34
U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/med... 71 9e-13
Z83115-5|CAJ85757.1| 58|Caenorhabditis elegans Hypothetical pr... 52 5e-07
Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical pr... 37 0.019
Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr... 31 0.94
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr... 31 0.94
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr... 31 0.94
Z47067-1|CAA87328.1| 776|Caenorhabditis elegans Hypothetical pr... 30 2.2
Z75548-4|CAA99912.1| 117|Caenorhabditis elegans Hypothetical pr... 29 5.0
U41279-8|AAL02436.1| 307|Caenorhabditis elegans Hypothetical pr... 29 5.0
AF016685-9|AAG24149.1| 330|Caenorhabditis elegans Seven tm rece... 28 6.6
Z93379-10|CAB07594.1| 508|Caenorhabditis elegans Hypothetical p... 28 8.8
Z92830-17|CAB07364.1| 508|Caenorhabditis elegans Hypothetical p... 28 8.8
Z54282-1|CAA91056.2| 1201|Caenorhabditis elegans Hypothetical pr... 28 8.8
X58520-1|CAA41410.1| 1203|Caenorhabditis elegans zinc-finger pro... 28 8.8
U41279-10|AAK31426.2| 308|Caenorhabditis elegans Hypothetical p... 28 8.8
AC006832-8|AAF40000.1| 465|Caenorhabditis elegans Hypothetical ... 28 8.8
>L26290-1|AAA27981.1| 441|Caenorhabditis elegans
clathrin-associated protein homologueprotein.
Length = 441
Score = 369 bits (908), Expect = e-102
Identities = 171/200 (85%), Positives = 183/200 (91%), Gaps = 2/200 (1%)
Frame = -1
Query: 676 KPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMRYRTTKDISLPFRVIPLVREVG 497
+ V IDDCQFHQCVKL+KFETEH+ISFIPPDGE+ELMRYRTTKDI LPFRVIPLVREV
Sbjct: 242 RAAVAIDDCQFHQCVKLTKFETEHAISFIPPDGEYELMRYRTTKDIQLPFRVIPLVREVS 301
Query: 496 RTKMEVKVVLKSNFKPSLLGQKIEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKR 317
R KMEVKVV+KSNFKPSLL QK+EV+IPTP NTSGVQLIC+KGKAKYKA ENAIVWKIKR
Sbjct: 302 RNKMEVKVVVKSNFKPSLLAQKLEVRIPTPPNTSGVQLICMKGKAKYKAGENAIVWKIKR 361
Query: 316 MAGMKETQLSAEIELLETDT--KKKWTRPPISMGFEVPFAPSGFKVRYLKVFEPKLNYSD 143
MAGMKE+Q+SAEI+LL T KKKW RPP+SM FEVPFAPSG KVRYLKVFEPKLNYSD
Sbjct: 362 MAGMKESQISAEIDLLSTGNVEKKKWNRPPVSMNFEVPFAPSGLKVRYLKVFEPKLNYSD 421
Query: 142 HDVIKWVRYIGRSGLYETRC 83
HDVIKWVRYIGRSGLYETRC
Sbjct: 422 HDVIKWVRYIGRSGLYETRC 441
>AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform b protein.
Length = 435
Score = 369 bits (908), Expect = e-102
Identities = 171/200 (85%), Positives = 183/200 (91%), Gaps = 2/200 (1%)
Frame = -1
Query: 676 KPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMRYRTTKDISLPFRVIPLVREVG 497
+ V IDDCQFHQCVKL+KFETEH+ISFIPPDGE+ELMRYRTTKDI LPFRVIPLVREV
Sbjct: 236 RAAVAIDDCQFHQCVKLTKFETEHAISFIPPDGEYELMRYRTTKDIQLPFRVIPLVREVS 295
Query: 496 RTKMEVKVVLKSNFKPSLLGQKIEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKR 317
R KMEVKVV+KSNFKPSLL QK+EV+IPTP NTSGVQLIC+KGKAKYKA ENAIVWKIKR
Sbjct: 296 RNKMEVKVVVKSNFKPSLLAQKLEVRIPTPPNTSGVQLICMKGKAKYKAGENAIVWKIKR 355
Query: 316 MAGMKETQLSAEIELLETDT--KKKWTRPPISMGFEVPFAPSGFKVRYLKVFEPKLNYSD 143
MAGMKE+Q+SAEI+LL T KKKW RPP+SM FEVPFAPSG KVRYLKVFEPKLNYSD
Sbjct: 356 MAGMKESQISAEIDLLSTGNVEKKKWNRPPVSMNFEVPFAPSGLKVRYLKVFEPKLNYSD 415
Query: 142 HDVIKWVRYIGRSGLYETRC 83
HDVIKWVRYIGRSGLYETRC
Sbjct: 416 HDVIKWVRYIGRSGLYETRC 435
>AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform a protein.
Length = 441
Score = 369 bits (908), Expect = e-102
Identities = 171/200 (85%), Positives = 183/200 (91%), Gaps = 2/200 (1%)
Frame = -1
Query: 676 KPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMRYRTTKDISLPFRVIPLVREVG 497
+ V IDDCQFHQCVKL+KFETEH+ISFIPPDGE+ELMRYRTTKDI LPFRVIPLVREV
Sbjct: 242 RAAVAIDDCQFHQCVKLTKFETEHAISFIPPDGEYELMRYRTTKDIQLPFRVIPLVREVS 301
Query: 496 RTKMEVKVVLKSNFKPSLLGQKIEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKR 317
R KMEVKVV+KSNFKPSLL QK+EV+IPTP NTSGVQLIC+KGKAKYKA ENAIVWKIKR
Sbjct: 302 RNKMEVKVVVKSNFKPSLLAQKLEVRIPTPPNTSGVQLICMKGKAKYKAGENAIVWKIKR 361
Query: 316 MAGMKETQLSAEIELLETDT--KKKWTRPPISMGFEVPFAPSGFKVRYLKVFEPKLNYSD 143
MAGMKE+Q+SAEI+LL T KKKW RPP+SM FEVPFAPSG KVRYLKVFEPKLNYSD
Sbjct: 362 MAGMKESQISAEIDLLSTGNVEKKKWNRPPVSMNFEVPFAPSGLKVRYLKVFEPKLNYSD 421
Query: 142 HDVIKWVRYIGRSGLYETRC 83
HDVIKWVRYIGRSGLYETRC
Sbjct: 422 HDVIKWVRYIGRSGLYETRC 441
>AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin,
mu/medium chain (clathrinassociated complex) protein 1
protein.
Length = 426
Score = 145 bits (352), Expect = 3e-35
Identities = 77/195 (39%), Positives = 112/195 (57%), Gaps = 1/195 (0%)
Frame = -1
Query: 667 VVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMRYRTTKDISLPFRVIPLVREVGRTK 488
V ++D +FHQCV+LS+F++E +ISFIPPDGEFELM YR T + V V ++
Sbjct: 234 VELEDIKFHQCVRLSRFDSERTISFIPPDGEFELMSYRLTTQVKPLIWVEAAVERHAHSR 293
Query: 487 MEVKVVLKSNFKPSLLGQKIEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAG 308
+E V KS FK + +EV IP P + S + G AKY NAIVW I+ G
Sbjct: 294 VEYMVKAKSQFKRQSVANHVEVIIPVPSDVSAPKFKTGAGTAKYVPELNAIVWSIRSFPG 353
Query: 307 MKETQLSAEIELLETDTKKKWTRPPISMGFEVP-FAPSGFKVRYLKVFEPKLNYSDHDVI 131
+E + + L +++ RPPI++ FE+P + SG +VRYLK+ E S + +
Sbjct: 354 GREYIMRSSFMLPSIGSEELEGRPPINVKFEIPYYTTSGLQVRYLKIIEK----SGYQAL 409
Query: 130 KWVRYIGRSGLYETR 86
WVRY+ ++G Y+ R
Sbjct: 410 PWVRYVTQNGDYQMR 424
>Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical
protein K11D2.3a protein.
Length = 422
Score = 143 bits (346), Expect = 1e-34
Identities = 74/195 (37%), Positives = 108/195 (55%), Gaps = 1/195 (0%)
Frame = -1
Query: 667 VVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMRYRTTKDISLPFRVIPLVREVGRTK 488
V ++D +FHQCV+LS+F+T+ +ISFIPPDG FELM YR T + + + ++
Sbjct: 230 VELEDVKFHQCVRLSRFDTDRTISFIPPDGAFELMSYRLTTVVKPLIWIETSIERHSHSR 289
Query: 487 MEVKVVLKSNFKPSLLGQKIEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAG 308
+ + KS FK +E+ IP P + + G KY ++A VW IK G
Sbjct: 290 VSFIIKAKSQFKRRSTANNVEIIIPVPSDADSPKFKTSIGSVKYTPEQSAFVWTIKNFPG 349
Query: 307 MKETQLSAEIELLETDTKKKWTRPPISMGFEVP-FAPSGFKVRYLKVFEPKLNYSDHDVI 131
KE L+A + L +++ RPPI + FE+P F SG +VRYLK+ E S + +
Sbjct: 350 GKEYLLTAHLSLPSVMSEESEGRPPIKVKFEIPYFTTSGIQVRYLKIIEK----SGYQAL 405
Query: 130 KWVRYIGRSGLYETR 86
WVRYI ++G YE R
Sbjct: 406 PWVRYITQNGEYEMR 420
>L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein (
Caenorhabditis elegans(unc-101) mRNA, complete cds. ).
Length = 422
Score = 142 bits (344), Expect = 3e-34
Identities = 73/195 (37%), Positives = 108/195 (55%), Gaps = 1/195 (0%)
Frame = -1
Query: 667 VVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMRYRTTKDISLPFRVIPLVREVGRTK 488
V ++D +FHQCV+LS+F+T+ +ISFIPPDG FELM YR T + + + ++
Sbjct: 230 VELEDVKFHQCVRLSRFDTDRTISFIPPDGAFELMSYRLTTVVKPLIWIETSIERHSHSR 289
Query: 487 MEVKVVLKSNFKPSLLGQKIEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAG 308
+ + KS FK +E+ IP P + + G KY ++A VW IK G
Sbjct: 290 VSFIIKAKSQFKRRSTANNVEIIIPVPSDADSPKFKTSIGSVKYTPEQSAFVWTIKNFPG 349
Query: 307 MKETQLSAEIELLETDTKKKWTRPPISMGFEVP-FAPSGFKVRYLKVFEPKLNYSDHDVI 131
KE L+A + L +++ RPPI + FE+P F SG +VRYLK+ E + + +
Sbjct: 350 GKEYLLTAHLSLPSVMSEESEGRPPIKVKFEIPYFTTSGIQVRYLKIIEKR----GYQAL 405
Query: 130 KWVRYIGRSGLYETR 86
WVRYI ++G YE R
Sbjct: 406 PWVRYITQNGEYEMR 420
>U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/medium
chain (clathrinassociated complex) protein 3 protein.
Length = 414
Score = 70.9 bits (166), Expect = 9e-13
Identities = 49/197 (24%), Positives = 92/197 (46%), Gaps = 4/197 (2%)
Frame = -1
Query: 664 VIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMRYRTTKD--ISLPFRVIPLVR-EVGR 494
++DD FH CV+ ++E E +SF+PPDG F L+ Y +++P V ++ +
Sbjct: 227 LLDDVSFHPCVRYKRWENEKVLSFVPPDGNFRLLSYHIAAQNMVAIPIYVRQVISLKPNA 286
Query: 493 TKMEVKVVLKSNFKPSLLGQKIEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRM 314
K+++ V K + L + + ++I P L+ G+ + + + W I ++
Sbjct: 287 GKLDLTVGPKLSMGKVL--EDVVLEITMPKCVQNCNLVASHGRIAFDPTTKLLQWTIGKI 344
Query: 313 AGMKETQLSAEIELLETDTKKKWTRPPISMGFEV-PFAPSGFKVRYLKVFEPKLNYSDHD 137
K + L + + T + PPIS+ F++ SG KV L ++ K +
Sbjct: 345 EVGKPSTLKGSVAVSGTTVAE---NPPISLKFKINQLVLSGLKVNRLDMYGEK-----YK 396
Query: 136 VIKWVRYIGRSGLYETR 86
K V+YI ++G + R
Sbjct: 397 PFKGVKYITKAGKFTIR 413
>Z83115-5|CAJ85757.1| 58|Caenorhabditis elegans Hypothetical
protein K11D2.3b protein.
Length = 58
Score = 52.0 bits (119), Expect = 5e-07
Identities = 26/53 (49%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Frame = -1
Query: 241 RPPISMGFEVP-FAPSGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETR 86
RPPI + FE+P F SG +VRYLK+ E S + + WVRYI ++G YE R
Sbjct: 8 RPPIKVKFEIPYFTTSGIQVRYLKIIEK----SGYQALPWVRYITQNGEYEMR 56
>Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical protein
C27H6.1 protein.
Length = 1657
Score = 36.7 bits (81), Expect = 0.019
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = -1
Query: 649 QFHQCVKLSKFETEHSISFIPPDG-EFELMRYRTTKDISL-PFRVIPLVREVGRTKMEVK 476
+FH V +F+ E I+F PPDG FE+MR+R + + + ++ +K+E++
Sbjct: 1328 EFHSIVNKPEFDKEQVIAFSPPDGCFFEIMRFRVRPPRNREKAMTVKSIMKIAGSKVEIR 1387
Query: 475 V 473
+
Sbjct: 1388 I 1388
Score = 35.1 bits (77), Expect = 0.058
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Frame = -1
Query: 379 CLKGKAKYKASENAIVWKIKRM-----AGMKETQLSAEIELLETDTKKKWTRPPISMGFE 215
C G+AKY+ ++VW+I R+ A K L EL D + P + F
Sbjct: 1469 CAIGEAKYEHVYRSLVWRIPRLPEKHHAAYKSHLLKCRFELSSFDLMPEEFLPRCDVDFT 1528
Query: 214 VPFAP-SGFKVRYLKVFEPKLNYSDHD-VIKWVRYIGR 107
+P A S VR + V + + D D V K+VRY+ +
Sbjct: 1529 MPLATVSNTVVRSVSVEQ----HEDSDRVEKFVRYVAK 1562
>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical protein
T25C12.3 protein.
Length = 2103
Score = 31.1 bits (67), Expect = 0.94
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = -1
Query: 199 SGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYE 92
+G VR+L V+ + N +D D + +R I RSGLYE
Sbjct: 2015 TGSDVRHLLVYVTQTNPTDADPSELLRTIKRSGLYE 2050
>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical protein
T25C12.3 protein.
Length = 2103
Score = 31.1 bits (67), Expect = 0.94
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = -1
Query: 199 SGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYE 92
+G VR+L V+ + N +D D + +R I RSGLYE
Sbjct: 2015 TGSDVRHLLVYVTQTNPTDADPSELLRTIKRSGLYE 2050
>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical protein
T25C12.3 protein.
Length = 2103
Score = 31.1 bits (67), Expect = 0.94
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = -1
Query: 199 SGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYE 92
+G VR+L V+ + N +D D + +R I RSGLYE
Sbjct: 2015 TGSDVRHLLVYVTQTNPTDADPSELLRTIKRSGLYE 2050
>Z47067-1|CAA87328.1| 776|Caenorhabditis elegans Hypothetical
protein C43C3.1 protein.
Length = 776
Score = 29.9 bits (64), Expect = 2.2
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
Frame = -1
Query: 571 ELMRYRTTKDISLPFRVIPLVREVGRTKMEVKVVLKSNFKPSLLGQKIEVKIPTPLNTSG 392
E +R R ++I +P V + + E+ +V K+N L Q EV+I T
Sbjct: 246 EEIRIRLEREIHRMNTTMPGVVCYDKLREELSIV-KNNLS-GLQKQVSEVEIRNNSLTQQ 303
Query: 391 VQLICLKGKAKYKASENAIVWKIKRMAGMKE--TQLSAEIELL 269
++ L+ K E+ + +KIK + M+E T +S E+E L
Sbjct: 304 IEFYRLEISENNKLFEDTLEFKIKEIEKMREQCTAISVELEKL 346
>Z75548-4|CAA99912.1| 117|Caenorhabditis elegans Hypothetical
protein R90.4 protein.
Length = 117
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = -1
Query: 574 FELMRYRTTKDISLPFRVIPLVREVGRTKMEVKVVLKSNFKPSLLGQKIEVKIPTPLNTS 395
F+ + + D + FRV RE+ R +V V K N+ L +K +KIP
Sbjct: 31 FDRLMEESRTDSNGQFRVSGSKREISRIDPKVNVYHKCNYN-GLCSKKFTIKIPKDYINR 89
Query: 394 GVQ 386
G Q
Sbjct: 90 GSQ 92
>U41279-8|AAL02436.1| 307|Caenorhabditis elegans Hypothetical
protein C17C3.12b protein.
Length = 307
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -1
Query: 523 VIPLVREVGRTKMEVKVVLKSNFKPSLLGQKIEVKI 416
V PLVRE+ R K +LK F L+G KI+ K+
Sbjct: 55 VKPLVREMDRDARINKQLLKKAFDLKLMGLKIDPKL 90
>AF016685-9|AAG24149.1| 330|Caenorhabditis elegans Seven tm
receptor protein 87 protein.
Length = 330
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 456 KLLFSTTLTSILVRPTSRTSGMTRNGRDMSFVV 554
+L+FS T+ ++ S TSGM + D SFVV
Sbjct: 45 RLMFSYTIVEMVYSFLSFTSGMKAHSTDTSFVV 77
>Z93379-10|CAB07594.1| 508|Caenorhabditis elegans Hypothetical
protein F21H7.2 protein.
Length = 508
Score = 27.9 bits (59), Expect = 8.8
Identities = 22/87 (25%), Positives = 42/87 (48%)
Frame = -1
Query: 655 DCQFHQCVKLSKFETEHSISFIPPDGEFELMRYRTTKDISLPFRVIPLVREVGRTKMEVK 476
D +F K T ++++ +P D + + ++TK +S V + R + E +
Sbjct: 420 DKEFFSDYKRIWTNTLYNLNPLPTDAK-DRPDPKSTKPVSFKLPTTTTVYK-RRVQSEAQ 477
Query: 475 VVLKSNFKPSLLGQKIEVKIPTPLNTS 395
V F+P+ GQK++ K +P N+S
Sbjct: 478 KVTTVTFQPTPKGQKMKKKKSSPSNSS 504
>Z92830-17|CAB07364.1| 508|Caenorhabditis elegans Hypothetical
protein F21H7.2 protein.
Length = 508
Score = 27.9 bits (59), Expect = 8.8
Identities = 22/87 (25%), Positives = 42/87 (48%)
Frame = -1
Query: 655 DCQFHQCVKLSKFETEHSISFIPPDGEFELMRYRTTKDISLPFRVIPLVREVGRTKMEVK 476
D +F K T ++++ +P D + + ++TK +S V + R + E +
Sbjct: 420 DKEFFSDYKRIWTNTLYNLNPLPTDAK-DRPDPKSTKPVSFKLPTTTTVYK-RRVQSEAQ 477
Query: 475 VVLKSNFKPSLLGQKIEVKIPTPLNTS 395
V F+P+ GQK++ K +P N+S
Sbjct: 478 KVTTVTFQPTPKGQKMKKKKSSPSNSS 504
>Z54282-1|CAA91056.2| 1201|Caenorhabditis elegans Hypothetical
protein F52E10.1 protein.
Length = 1201
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +2
Query: 566 ELKLSVRWYE-GDGMFSFELAQLHALVELTVVND 664
+L++ V +YE GDG F +L +L A+ + VND
Sbjct: 46 DLEVVVNFYEAGDGTFQLQLPKLTAVKPVDKVND 79
>X58520-1|CAA41410.1| 1203|Caenorhabditis elegans zinc-finger
protein protein.
Length = 1203
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +2
Query: 566 ELKLSVRWYE-GDGMFSFELAQLHALVELTVVND 664
+L++ V +YE GDG F +L +L A+ + VND
Sbjct: 46 DLEVVVNFYEAGDGTFQLQLPKLTAVKPVDKVND 79
>U41279-10|AAK31426.2| 308|Caenorhabditis elegans Hypothetical
protein C17C3.12a protein.
Length = 308
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -1
Query: 523 VIPLVREVGRTKMEVKVVLKSNFKPSLLGQKIEVK 419
V PLVRE+ R K +LK F L+G KI+ K
Sbjct: 55 VKPLVREMDRDARINKQLLKKAFDLKLMGLKIDPK 89
>AC006832-8|AAF40000.1| 465|Caenorhabditis elegans Hypothetical
protein ZK355.6 protein.
Length = 465
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = -1
Query: 406 LNTSGVQLICL--KGKAKYKASENAIVWKIKRM 314
LN S ++ CL GK +A + VWK+K+M
Sbjct: 335 LNMSSLEPFCLFIYGKVVLEAGDEEFVWKLKKM 367
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,398,323
Number of Sequences: 27780
Number of extensions: 393594
Number of successful extensions: 1262
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1250
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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