Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_T7_C07
(795 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 30 0.33
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 29 1.0
SPCC1840.01c |mog1|SPCC790.04c|Ran GTPase binding protein Mog1 |... 28 1.8
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 28 1.8
SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po... 27 3.1
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1... 27 3.1
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p... 26 5.4
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 26 5.4
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom... 26 5.4
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy... 26 7.1
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 26 7.1
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch... 26 7.1
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 25 9.4
SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|ch... 25 9.4
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 30.3 bits (65), Expect = 0.33
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = -2
Query: 140 YGPKIPDNFKPNLASQTCKQDVTL---EIDSSSSS 45
Y P IP NF PN++ T + V L +DS SS
Sbjct: 1004 YAPSIPPNFNPNVSIDTMTEGVALPSATLDSDKSS 1038
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 28.7 bits (61), Expect = 1.0
Identities = 36/145 (24%), Positives = 59/145 (40%), Gaps = 4/145 (2%)
Frame = -2
Query: 473 KESEQNKNEGV---QVTETINKFDKIDLYKSIFLSDSEDEDVGQTKNNDRDFADAPKNLE 303
KES+ N+ V E K D K+ +D + ++ + ND+D K E
Sbjct: 424 KESKDENNKASLHKDVEEKDTKITNEDTGKTE--TDVKAKETDSIEANDKDEKTDSKETE 481
Query: 302 RNNSPPRGIFANIDFHEINSWKRPDKDVHEQKPKDADGQTEVDKVENVPAPDETYGPKIP 123
A++ E +S + DK E+K D + DKVE + D P
Sbjct: 482 DKVEETESKEADVKAKETDSIEVDDK---EEK---TDSKETADKVEQTDSKDTNEKPAKD 535
Query: 122 DNFKPN-LASQTCKQDVTLEIDSSS 51
DN + N A + +DV +I+ ++
Sbjct: 536 DNKEANEKAEKVDSKDVKEKIEEAA 560
>SPCC1840.01c |mog1|SPCC790.04c|Ran GTPase binding protein Mog1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 190
Score = 27.9 bits (59), Expect = 1.8
Identities = 29/132 (21%), Positives = 60/132 (45%), Gaps = 5/132 (3%)
Frame = -2
Query: 485 ELFLKESEQNKNEGVQVTETINK-FD-KIDLY--KSI-FLSDSEDEDVGQTKNNDRDFAD 321
E+FL++S++N +++ E I K FD + Y SI F +D+ + + K+ D +
Sbjct: 31 EVFLQDSKENLTVIIELLEKIEKPFDGSVAAYHFNSIAFDNDASQRVIWRDKSLGEDDFE 90
Query: 320 APKNLERNNSPPRGIFANIDFHEINSWKRPDKDVHEQKPKDADGQTEVDKVENVPAPDET 141
++ + + S +G ++ + N + + D QT++ N P P+ +
Sbjct: 91 GMRSEKASGSSVQGCQRVLEKGKRNPESATNVAIFVNVITLIDFQTDIVISVNAPLPNTS 150
Query: 140 YGPKIPDNFKPN 105
P +N P+
Sbjct: 151 SVPSSVENIPPS 162
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -2
Query: 296 NSPPRGIFANIDFHEINSWKRPD--KDVHEQKPKDAD 192
N RGIFA D ++ SW PD +VH +K ++
Sbjct: 2518 NGQARGIFAGDDKGQVFSWMLPDTTSNVHLEKDNTSE 2554
>SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 351
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -2
Query: 218 HEQKPKDADGQTEVDKVENVPAPDETYGPKIPDNFKPNLASQTC 87
H + +A + D V N+ + ET GP+I D K + TC
Sbjct: 144 HAESTPNASWTDQFDNVANLLSHYETTGPEIWDQTKGTVDGFTC 187
>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
Epe1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 948
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 394 LYKSILSNLFIVSVTWTPSFLFCSDSFKN 480
L + I LF ++ WTPSF +F+N
Sbjct: 654 LEQLIFQALFSFAINWTPSFFLNHSNFEN 682
>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 489
Score = 26.2 bits (55), Expect = 5.4
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Frame = -2
Query: 278 IFANID---FHEINS--WKRPDKDVHEQKPKDADGQTEVDKVENVPAPDETYGPKIPDNF 114
IF+ +D FH+ S K D +H+ +DA G + E++PAP P+ +F
Sbjct: 396 IFSEVDRIAFHKFLSENTKPEDSSIHKHS-RDASGDSTKGFAEHMPAPARRRRPQSTASF 454
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 26.2 bits (55), Expect = 5.4
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = -2
Query: 467 SEQNKNEGVQVTETINKFDKIDLYKSIFLSDSEDEDVGQTKNNDRDFAD 321
S N+N+ + IN D+ D SDSE+ED + ++DR FA+
Sbjct: 783 SRGNENKYPRSNFFINGSDREDF------SDSEEEDGNDSSDDDRGFAE 825
>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1466
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +2
Query: 173 YRLPFDRPHLWAFV 214
YR+ FD PHLWAF+
Sbjct: 1122 YRI-FDSPHLWAFL 1134
>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 386
Score = 25.8 bits (54), Expect = 7.1
Identities = 17/67 (25%), Positives = 37/67 (55%)
Frame = -2
Query: 488 AELFLKESEQNKNEGVQVTETINKFDKIDLYKSIFLSDSEDEDVGQTKNNDRDFADAPKN 309
A+ F++E E++ +E ++++ I+ ++ L + DV ++D DF+D P++
Sbjct: 201 AQPFVEEGEKDYDEAAAAKAGKSEWE-IE-FEKFKLEQKKQPDVA---SSDGDFSDEPES 255
Query: 308 LERNNSP 288
ER+ P
Sbjct: 256 EERDEVP 262
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.8 bits (54), Expect = 7.1
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -2
Query: 545 ITSTSNKTELVGAPKRMTVAELFLKESEQNKNEGVQVTETINKFD 411
I SN+ + PK + V + F+ E EQN EG ++ ++ D
Sbjct: 1166 IHGVSNEKAVNLGPKFLQVIQKFIDEKEQNL-EGTELDPSLQSLD 1209
>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
45|Schizosaccharomyces pombe|chr 1|||Manual
Length = 558
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 644 VHDRDSFAKGQVSFSGSKSLNRESVKIDXRP 552
VH+ G+VSFS S S N +S +I P
Sbjct: 236 VHELFGIDNGRVSFSNSTSDNEKSTEIVLNP 266
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -2
Query: 221 VHEQKPKDADGQTEVDKVENVPAPDETYGPKIPDNFK 111
+H K + D D + +P PD YG K +FK
Sbjct: 1793 IHNTKTDELDITLLSDILSQLPCPDAYYGIKRETSFK 1829
>SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = -2
Query: 257 HEINSWKRPDKDVHEQKPKDADGQTEVDKVENVPAPDETY 138
H +N + PD D KP+D + K N+ DE Y
Sbjct: 212 HPVNRKEAPDYDSLVYKPQDLRTLKNMIKEGNITEVDELY 251
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,067,067
Number of Sequences: 5004
Number of extensions: 64913
Number of successful extensions: 233
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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