Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_T7_C07
(795 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0626 - 30456714-30456829,30456951-30457023,30457136-304572... 29 3.2
01_06_0905 + 32880368-32880633,32882439-32882568,32882704-328828... 29 3.2
08_02_0874 - 22102158-22102333,22102354-22102498 29 4.3
02_02_0016 - 6118739-6118758,6119116-6119236,6119478-6119613,611... 29 5.6
01_06_1654 - 38924090-38924101,38924183-38924215,38924737-389248... 28 7.4
08_01_1000 + 10154024-10154147,10155500-10155761,10155839-101558... 28 9.8
07_01_0247 + 1813979-1814207,1815293-1815351,1815725-1815802,181... 28 9.8
06_03_0097 - 16607936-16608712,16610114-16610320,16611220-166113... 28 9.8
02_04_0179 + 20682852-20684510,20684593-20684661,20684741-206848... 28 9.8
>02_05_0626 -
30456714-30456829,30456951-30457023,30457136-30457250,
30457368-30457450,30457532-30457685,30457859-30458095,
30458212-30458435,30458657-30458774,30459286-30459614
Length = 482
Score = 29.5 bits (63), Expect = 3.2
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 204 GLLFVNIFIGSLPRVYFVEIDISENTT 284
G + +IF+G+ PR YF+++D + T
Sbjct: 110 GQYYTSIFVGNPPRPYFLDVDTGSDLT 136
>01_06_0905 +
32880368-32880633,32882439-32882568,32882704-32882894,
32883625-32883852,32884062-32884224,32884343-32884416,
32884484-32884601,32884722-32884788,32885152-32885223,
32885350-32885513
Length = 490
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 150 GSRNILDF-IDFRLTVRIFGLLFVNIFIGSLPRVYFVEID 266
G ++DF ++ + GL F + +GS P+ YFV+ID
Sbjct: 70 GVAGVVDFPVEGSANPFMVGLYFTRVKLGSPPKEYFVQID 109
>08_02_0874 - 22102158-22102333,22102354-22102498
Length = 106
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -2
Query: 602 SGSKSLNRESVKIDXRPVXITSTSNKTELVG-APKRMTV 489
SGS S + V +D P +TS K ELVG P R+ V
Sbjct: 2 SGSTSPKKRHVHLDALPSCMTSVVAKGELVGEVPNRLAV 40
>02_02_0016 -
6118739-6118758,6119116-6119236,6119478-6119613,
6119887-6119993,6120316-6120409,6120509-6120705,
6121872-6121943,6122597-6122773,6122862-6122936,
6123027-6123167,6123837-6124025,6124415-6124480,
6124564-6124714,6125040-6125200,6126279-6126410,
6126508-6126833,6126906-6126942,6127056-6127088,
6127500-6127554,6127666-6127753,6127817-6127862
Length = 807
Score = 28.7 bits (61), Expect = 5.6
Identities = 29/101 (28%), Positives = 50/101 (49%)
Frame = -2
Query: 311 NLERNNSPPRGIFANIDFHEINSWKRPDKDVHEQKPKDADGQTEVDKVENVPAPDETYGP 132
N+E N +P RGI+A + I++ +RP++ + E Q EV EN D+T+
Sbjct: 707 NVEANVAPKRGIYAPAKEYIIHA-ERPNETLVEAFKNMRIHQEEVLPDEN---GDDTH-E 761
Query: 131 KIPDNFKPNLASQTCKQDVTLEIDSSSSSDCWVDANEVKKK 9
I +N SQ +V +E D S+ V+ N+ +++
Sbjct: 762 AIEENGVEE--SQEDAVEVDVEADGSTDGTVLVNGNDTEEQ 800
>01_06_1654 -
38924090-38924101,38924183-38924215,38924737-38924829,
38924909-38924965,38925048-38925143,38925237-38925304,
38925429-38925486,38925572-38925658,38925935-38925982,
38926060-38926116,38926200-38926458,38926666-38926858,
38926991-38927098,38927849-38927957
Length = 425
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -2
Query: 236 RPDKDVHEQKPKDADGQTEVDKVENV-PAPDETYGPKIPD 120
R KDVH +KPKD D + ++ + V P ++ +IPD
Sbjct: 214 RKIKDVHAKKPKDWDDREYIEDPDAVKPEGYDSIPKEIPD 253
>08_01_1000 +
10154024-10154147,10155500-10155761,10155839-10155885,
10155967-10155998,10156079-10156146,10156214-10156605,
10156811-10157009,10157494-10157636,10157722-10158366,
10158493-10158551,10158725-10158823
Length = 689
Score = 27.9 bits (59), Expect = 9.8
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -2
Query: 251 INSWKRPDKDVHEQKPKDADGQTE 180
+N+ +P+ ++ Q P++ADGQ E
Sbjct: 506 VNAEAQPESQINPQSPRNADGQPE 529
>07_01_0247 +
1813979-1814207,1815293-1815351,1815725-1815802,
1816369-1816536,1816664-1817578
Length = 482
Score = 27.9 bits (59), Expect = 9.8
Identities = 19/78 (24%), Positives = 32/78 (41%)
Frame = -2
Query: 593 KSLNRESVKIDXRPVXITSTSNKTELVGAPKRMTVAELFLKESEQNKNEGVQVTETINKF 414
K N S+ D SNK + GAP V + F+ E+E +E ++ T +
Sbjct: 156 KLANDLSLLTDASVAICLHDSNKAQFFGAPSVKPVVDAFVSEAEPFADEQLKAKLTSMQS 215
Query: 413 DKIDLYKSIFLSDSEDED 360
+ + L D + E+
Sbjct: 216 ELVQLENEEEEKDKKTEE 233
>06_03_0097 - 16607936-16608712,16610114-16610320,16611220-16611336,
16611409-16611690,16611811-16612294,16612791-16612929,
16613138-16613243,16613396-16613562,16613632-16613707,
16614173-16614321,16614813-16614874,16615232-16615335,
16616856-16616950,16617046-16617136,16617785-16617922
Length = 997
Score = 27.9 bits (59), Expect = 9.8
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Frame = -2
Query: 542 TSTSNKTELVG-APKRMTVAELFLKESEQNKNEGVQVTETINKFDKIDLYKSIFLSDSED 366
T+ +N+ E AP+ +VA E++ + + ++ + +DLYK+IF SD D
Sbjct: 691 TTRTNEVESSSIAPQHTSVAGATETEAKGAATDPEIESSSVQR--PVDLYKAIF-SDDSD 747
Query: 365 EDVGQTKNNDRDFADAPKNLERNNSPPRGIFANIDFHEINSWKRPDKDVHEQKP 204
+D+ + N D K E N + A DF E + K DV +KP
Sbjct: 748 DDMAEPLANQP--VDPVKTSEDANMVLNRLVAE-DFLE-SLGKELGLDVPPEKP 797
>02_04_0179 + 20682852-20684510,20684593-20684661,20684741-20684809,
20686779-20688206
Length = 1074
Score = 27.9 bits (59), Expect = 9.8
Identities = 24/127 (18%), Positives = 59/127 (46%)
Frame = -2
Query: 521 ELVGAPKRMTVAELFLKESEQNKNEGVQVTETINKFDKIDLYKSIFLSDSEDEDVGQTKN 342
E++G + E+ K+ + K+E ++ ++ D ++L I ++++ +
Sbjct: 922 EILGMMNNLHYVEVVYKDPKVMKSEKIK-----HQTDNVELQPHII----KEKEKKVKEE 972
Query: 341 NDRDFADAPKNLERNNSPPRGIFANIDFHEINSWKRPDKDVHEQKPKDADGQTEVDKVEN 162
++ A+ KN+ +S +D H + WK+ K+ ++K K+ + + + +N
Sbjct: 973 EEKCMAEIKKNMRIPDS-------TLDEHGV--WKKDQKEADQKKAKEEEEKHMAEIKKN 1023
Query: 161 VPAPDET 141
+ PD T
Sbjct: 1024 MGIPDST 1030
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,804,329
Number of Sequences: 37544
Number of extensions: 413427
Number of successful extensions: 1230
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1229
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -