Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_T7_C05
(1413 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 33 0.37
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 33 0.37
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 33 0.37
Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical pr... 33 0.65
Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical pr... 32 0.85
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 32 0.85
AC006671-6|AAF39916.1| 411|Caenorhabditis elegans Hypothetical ... 31 1.5
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 30 3.4
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 33.5 bits (73), Expect = 0.37
Identities = 21/77 (27%), Positives = 26/77 (33%), Gaps = 2/77 (2%)
Frame = -1
Query: 228 FKXRPXCPPXXXPPPSXPXSXTTRXXXPGTCXXHXSAFSPXPSPXXIXPTPPRLXRXSXK 49
F+ + PP PPP P + G+ +A SP P P PP
Sbjct: 225 FRGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP 284
Query: 48 XXHQXKPP--XXPPPXP 4
PP PPP P
Sbjct: 285 AGGSPPPPRAGSPPPPP 301
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 33.5 bits (73), Expect = 0.37
Identities = 21/77 (27%), Positives = 26/77 (33%), Gaps = 2/77 (2%)
Frame = -1
Query: 228 FKXRPXCPPXXXPPPSXPXSXTTRXXXPGTCXXHXSAFSPXPSPXXIXPTPPRLXRXSXK 49
F+ + PP PPP P + G+ +A SP P P PP
Sbjct: 246 FRGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP 305
Query: 48 XXHQXKPP--XXPPPXP 4
PP PPP P
Sbjct: 306 AGGSPPPPRAGSPPPPP 322
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 33.5 bits (73), Expect = 0.37
Identities = 21/77 (27%), Positives = 26/77 (33%), Gaps = 2/77 (2%)
Frame = -1
Query: 228 FKXRPXCPPXXXPPPSXPXSXTTRXXXPGTCXXHXSAFSPXPSPXXIXPTPPRLXRXSXK 49
F+ + PP PPP P + G+ +A SP P P PP
Sbjct: 231 FRGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP 290
Query: 48 XXHQXKPP--XXPPPXP 4
PP PPP P
Sbjct: 291 AGGSPPPPRAGSPPPPP 307
>Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical
protein Y49E10.10 protein.
Length = 425
Score = 32.7 bits (71), Expect = 0.65
Identities = 23/82 (28%), Positives = 29/82 (35%), Gaps = 5/82 (6%)
Frame = -1
Query: 234 PXFKXRPXCPPXXXPPPSX--PXSXTTRXXXPGTCXXHXSAFSPXPSPXXI---XPTPPR 70
P K P PPP+ P TT+ P T + +P P P + P PP
Sbjct: 178 PTTKAPPPPTTKAPPPPTTKAPPPPTTKAPPPPTTNKEVTTVAPVPKPAPVTAPAPNPPA 237
Query: 69 LXRXSXKXXHQXKPPXXPPPXP 4
+ K KP PP P
Sbjct: 238 PENTTAK-VETTKPTKAAPPAP 258
>Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical
protein C31C9.6 protein.
Length = 965
Score = 32.3 bits (70), Expect = 0.85
Identities = 21/73 (28%), Positives = 27/73 (36%), Gaps = 2/73 (2%)
Frame = -1
Query: 216 PXCPPXXXPPPSXPXSXTTRXXXPGTCXXHXSAFSPXPSPXXIXPTPPRLXR--XSXKXX 43
P P PPP P S P + S+ +P +P P P R+ S +
Sbjct: 426 PKTPTRVAPPP--PPSAPPTIKFPISTGTSYSSTTPPTTPKPAPPPPSRIPNPSPSPQPA 483
Query: 42 HQXKPPXXPPPXP 4
K P PPP P
Sbjct: 484 EVSKSPPPPPPLP 496
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 32.3 bits (70), Expect = 0.85
Identities = 21/73 (28%), Positives = 27/73 (36%), Gaps = 2/73 (2%)
Frame = -1
Query: 216 PXCPPXXXPPPSXPXSXTTRXXXPGTCXXHXSAFSPXPSPXXIXPTPPRLXR--XSXKXX 43
P P PPP P S P + S+ +P +P P P R+ S +
Sbjct: 433 PKTPTRVAPPP--PPSAPPTIKFPISTGPSYSSTTPPTTPKPAPPPPSRIPNPSPSPQPA 490
Query: 42 HQXKPPXXPPPXP 4
K P PPP P
Sbjct: 491 EVSKSPPPPPPLP 503
>AC006671-6|AAF39916.1| 411|Caenorhabditis elegans Hypothetical
protein K08A2.1 protein.
Length = 411
Score = 31.5 bits (68), Expect = 1.5
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 123 SAFSPXPSPXXIXPTPPRLXRXSXKXXHQXKP 28
S +P PSP + P PPRL + HQ +P
Sbjct: 272 SPATPQPSPPAVTPPPPRLLPAATTESHQTEP 303
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 30.3 bits (65), Expect = 3.4
Identities = 19/70 (27%), Positives = 23/70 (32%), Gaps = 2/70 (2%)
Frame = -1
Query: 216 PXCPPXXXPPPSXP--XSXTTRXXXPGTCXXHXSAFSPXPSPXXIXPTPPRLXRXSXKXX 43
P PP PPP P + + P T P P I P PPRL +
Sbjct: 147 PRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPRTPPSPIPPPPPRLNSHDRRAL 206
Query: 42 HQXKPPXXPP 13
+P P
Sbjct: 207 RARRPMVHRP 216
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,609,326
Number of Sequences: 27780
Number of extensions: 71920
Number of successful extensions: 608
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4016977708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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