Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_C04
         (792 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0302 - 2286171-2286341,2286747-2286968                           29   4.2  
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238...    29   5.6  
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598...    29   5.6  
06_01_1052 + 8312752-8312862,8312969-8313041,8313285-8313362,831...    28   7.4  
02_02_0718 - 13290764-13290897,13292375-13293041,13293364-132937...    28   9.8  

>12_01_0302 - 2286171-2286341,2286747-2286968
          Length = 130

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 79  RLQRSRKKHGEDLPTGGRSRRKGEKLE*MQREEQ 180
           RL+R RK +  D+   G  + +GEKLE  + +E+
Sbjct: 57  RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90


>09_04_0737 -
           19822822-19822973,19823069-19823135,19823666-19823822,
           19824003-19824177,19824364-19824481,19824676-19824874,
           19824983-19825062,19825141-19825257,19825791-19825961,
           19826121-19826597
          Length = 570

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +2

Query: 71  FYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVV 217
           F+VD  G G +  ++++LAV+ G R      CR     VV     DVVV
Sbjct: 93  FHVDPTGDGSSFLQLHRLAVE-GTRRLLAACCRSGVRTVVYTGSADVVV 140


>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
            30560292-30560346,30560537-30560613,30561228-30561315,
            30561490-30561593,30562050-30562231,30562347-30563109,
            30563195-30563438,30564513-30564658,30565158-30565283,
            30565404-30565517,30565595-30565762,30566283-30566528,
            30566605-30566767,30566970-30567064,30567274-30567357,
            30567769-30568055,30568359-30568572,30568923-30569140,
            30569386-30569623,30570312-30571118,30571202-30571301,
            30571694-30571737,30571824-30571973
          Length = 1942

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = -3

Query: 238  PPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SL 59
            P F T+LY     ++KD      S+     L S+  Y  L+DP   S D+    + +   
Sbjct: 1349 PEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYA-LLDPTWASQDNTSTAIGNIVA 1407

Query: 58   ILHSF 44
            +LHSF
Sbjct: 1408 LLHSF 1412


>06_01_1052 +
           8312752-8312862,8312969-8313041,8313285-8313362,
           8313443-8313523,8313706-8313779,8313865-8313919,
           8314031-8314079,8314222-8314359,8314455-8314536,
           8315131-8315209,8315357-8315400,8315479-8315673,
           8316110-8316185,8317427-8317507,8317623-8317703,
           8318128-8318204,8318402-8318499,8318672-8318809,
           8319397-8319478,8319564-8319642,8319885-8319931,
           8320014-8320228,8320330-8320450,8320529-8320648,
           8320731-8320849,8320964-8321036,8321112-8321231,
           8321538-8321606,8321756-8321926,8322004-8322051,
           8322192-8322333,8323244-8323341,8323684-8323828,
           8323928-8324013,8324112-8324222,8324456-8324530,
           8324836-8324901,8325036-8325224,8325315-8325425,
           8326616-8326696,8327192-8327371
          Length = 1385

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -1

Query: 666 SNPRIPYTNHPRLNIHFHQSPDAVXEGVRAGVKASVV 556
           S+ +I   N    +IHF  S +A+  GVRAG+  S++
Sbjct: 172 SSSKIKLVNDLLESIHFIASIEAMFLGVRAGIHPSII 208


>02_02_0718 -
           13290764-13290897,13292375-13293041,13293364-13293719,
           13294559-13294629,13295326-13295336
          Length = 412

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 439 IPRILRSPPPTHPLIEDVVMATNQAIIDYK 350
           +P++L+SPP T+  IED    +  + ID K
Sbjct: 382 LPQLLQSPPETYHAIEDGHNPSKTSFIDMK 411


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,669,660
Number of Sequences: 37544
Number of extensions: 391344
Number of successful extensions: 1008
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)