Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_C04
         (792 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75714-2|CAB00059.1|  474|Caenorhabditis elegans Hypothetical pr...    33   0.23 
U64845-2|AAC48031.2|  980|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical...    28   8.8  
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical...    28   8.8  

>Z75714-2|CAB00059.1|  474|Caenorhabditis elegans Hypothetical
           protein ZC434.3 protein.
          Length = 474

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -2

Query: 725 FRPXAXXHPP--LXFXVHQPDHQIPGFHTPTTPGLTSISINPLTPX*KEFAPGL 570
           FR     +PP    F   Q D+ +P F+ P  PG  + S++PL P   +++ GL
Sbjct: 26  FRVKRQAYPPNPAPFKPRQEDYNLPPFYQPN-PGRDASSLSPLFPFHSQYSNGL 78


>U64845-2|AAC48031.2|  980|Caenorhabditis elegans Hypothetical
           protein F45F2.10 protein.
          Length = 980

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -1

Query: 702 PSPXIXGTSTRSSNPRIPYTNHPRLNIHFHQSPDAVXEGVRAGVKASVVIRGS 544
           P+P   G   R+ NP        R N+H H   +   + VR G    +V+RG+
Sbjct: 197 PAPIYPGQKERTKNPIEYVVEKERNNLHVHHFNEWSGDNVRDG---EMVVRGT 246


>AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18b protein.
          Length = 1459

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 563  PLSSEAPSAYLTPSSLGMXKGVSPP 489
            P+++EAP+A   PS   + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227


>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18a protein.
          Length = 1456

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 563  PLSSEAPSAYLTPSSLGMXKGVSPP 489
            P+++EAP+A   PS   + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,840,581
Number of Sequences: 27780
Number of extensions: 307917
Number of successful extensions: 907
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)