Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_T7_C01
(815 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 37 0.003
SPAC20G4.04c |hus1||checkpoint clamp complex protein Hus1|Schizo... 31 0.26
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 27 2.4
SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Ma... 27 3.2
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch... 27 4.2
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch... 27 4.2
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 27 4.2
SPAC11D3.09 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Manual 26 5.6
SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr 1|||M... 26 5.6
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun... 26 5.6
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 37.1 bits (82), Expect = 0.003
Identities = 45/161 (27%), Positives = 72/161 (44%), Gaps = 3/161 (1%)
Frame = -2
Query: 547 RPITLLSHMGKLFERLLLRRVSPHI---LLRPKQFGFRSGHSTTLQLVRVMHHLADRSNA 377
RP+T+ S KL + +L R V I L GFR G S L + +N
Sbjct: 308 RPLTIGSPRDKLVQEIL-RIVLEAIYEPLFNTASHGFRPGRSCHSALRSIF------TNF 360
Query: 376 RQYTAAVFLDIEKAFDRVWHAGLIYKLLQNTDLQHAYVRLLGSYVEGRSFLVAVEGAKSS 197
+ T + DI+ FD + H LI LL + +++L+ R L A ++
Sbjct: 361 KGCTWWIEGDIKACFDSIPHDKLI-ALLSSKIKDQRFIQLI------RKALNAGYLTENR 413
Query: 196 VRPVTAGVPQGSVLAPVLYALYTNDIPTLEGNLQAWEADVK 74
+ G PQGS+++P+L +Y + + NL++ E D K
Sbjct: 414 YKYDIVGTPQGSIVSPILANIYLHQLDEFIENLKS-EFDYK 453
>SPAC20G4.04c |hus1||checkpoint clamp complex protein
Hus1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 30.7 bits (66), Expect = 0.26
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +2
Query: 449 PELLGSE-KDVRRHPSQQQPLEQLAHMRQQS 538
PEL S+ +D+ RHPSQ + E+ HMR S
Sbjct: 205 PELDPSQVEDISRHPSQTRAPEEFVHMRLDS 235
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = -1
Query: 173 SPGKRPGTSPLRSLHQRHSHARGQPPSVGSRREVGAV 63
SP P P S+HQ S QPPS S G V
Sbjct: 34 SPRLTPNLPPPFSVHQLQSFVPPQPPSSSSPSTTGTV 70
>SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 385
Score = 27.1 bits (57), Expect = 3.2
Identities = 17/62 (27%), Positives = 26/62 (41%)
Frame = -1
Query: 437 SLDNAAIGPRYAPLGGSVQRAPVHGRSLSRYREGLRPCLACGTDLQAVAEHGPPARLCAT 258
S+D + P +AP G+ + R + GL+ G DL VA A + +
Sbjct: 294 SIDIDVLDPAFAPATGTPETGGWSSREMRAILRGLQGLKFVGADLVEVAPAYDVAEITSL 353
Query: 257 AG 252
AG
Sbjct: 354 AG 355
>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 423
Score = 26.6 bits (56), Expect = 4.2
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = +3
Query: 450 PNCLGLRRMCGDTLLSSSRSNNLPICDSRVIGR*LEGFLLSLPGLGRAI 596
PN LR C DT RS N+ I S R + F + G GR +
Sbjct: 3 PNTTNLRNECWDTFSIPKRSQNIKINQSTKHQRSISDF-VGTAGPGRQV 50
>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
subfamily|Schizosaccharomyces pombe|chr 1|||Manual
Length = 887
Score = 26.6 bits (56), Expect = 4.2
Identities = 19/50 (38%), Positives = 23/50 (46%)
Frame = -3
Query: 468 SDPSNSGFAAVTRQRCNWSALCTTWRIGPTRASTRPQSFSISRRPSTVSG 319
S+PS S V + N + T RI TRAST SF S R + G
Sbjct: 784 SEPSRSASIMVANKDLNDRSFETVNRIVSTRASTTNASFMSSVRQNLGRG 833
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 26.6 bits (56), Expect = 4.2
Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 7/134 (5%)
Frame = -2
Query: 424 LQLVRVMHHLADRSNARQYTAAVFLDIEKAFDR--VWHAGLIYKL---LQNTD--LQHAY 266
L + + L R R Y + F+D+ KA V G I ++ L++ L++
Sbjct: 37 LDIKAFVQKLGQRLCHRPYVYSAFMDVVKALHNEIVDFPGFIERISVILRDYPDLLEYLN 96
Query: 265 VRLLGSYVEGRSFLVAVEGAKSSVRPVTAGVPQGSVLAPVLYALYTNDIPTLEGNLQAWE 86
+ L SY +L++ GA +++ T P G V P Y ND+P +
Sbjct: 97 IFLPSSY----KYLLSNSGANFTLQFTT---PSGPVSTPSTYVATYNDLPCTYHRAIGFV 149
Query: 85 ADVKLALFADDSAY 44
+ V+ AL ++ +
Sbjct: 150 SRVRRALLSNPEQF 163
>SPAC11D3.09 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 26.2 bits (55), Expect = 5.6
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = -1
Query: 449 VSQRSLDNAAIGPRYAPLGGSVQRAPVHGRSLSRYREGLRPCLACGTDLQAVA 291
++ S+D + P YAP G+ + A R L GL G D+ VA
Sbjct: 301 IAYLSIDIDVLDPAYAPATGTPESAGWTTRELRTILRGLDGIKLVGADIVEVA 353
>SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 26.2 bits (55), Expect = 5.6
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +3
Query: 156 RTLPWGTPAVTGRTDDLAPSTATRKDLPSTYDPSS 260
RTLP AVT T +++ S++ R DLP+ + S+
Sbjct: 140 RTLP---SAVTATTSNISTSSSHRSDLPNEWTNST 171
>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1165
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 236 SLHVRPQQSHIGVLEVRVLQQLVDQSRMPD 325
+L RP+ +IG++ RVL +VD ++ D
Sbjct: 350 NLEFRPKAVYIGIMARRVLMAMVDPLQVDD 379
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,270,745
Number of Sequences: 5004
Number of extensions: 69018
Number of successful extensions: 228
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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