Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_T7_B21
(777 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 4.9
U97408-1|AAB93344.2| 360|Caenorhabditis elegans Trypsin-like pr... 29 4.9
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr... 29 4.9
AL132860-19|CAB60502.1| 159|Caenorhabditis elegans Hypothetical... 29 4.9
U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore co... 28 6.5
Z67754-2|CAA91752.2| 677|Caenorhabditis elegans Hypothetical pr... 28 8.6
AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical... 28 8.6
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical... 28 8.6
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Frame = -1
Query: 711 PPSPXISGTSTRSSNPRFHTPTTPDLTSISINPPDAV-----LEGVRAGVK 574
PP P SG PR TP P L + P V L+G++ G K
Sbjct: 115 PPPPPPSGLGVAPQPPRPKTPVNPALAKLGGKNPGTVDRGEFLKGIQGGFK 165
>U97408-1|AAB93344.2| 360|Caenorhabditis elegans Trypsin-like
protease protein 6 protein.
Length = 360
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +2
Query: 578 TPARTPSSTASGGLMEMDVKSGVVGVWNRGFDDR 679
T P + +GG+ E+D ++ VVGV+ + F ++
Sbjct: 276 TSVACPGDSGAGGVKEIDKRTTVVGVFTKKFREK 309
>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical protein
F40H6.5 protein.
Length = 1288
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -1
Query: 732 VSPLCIKPP-SPXISGTSTRSSNPRFHTPTTPDLTSISINPPD 607
VS C++PP +P + ++T ++ P+ T +T TS +I D
Sbjct: 1145 VSMACVRPPTTPTTTTSTTTTTTPKLTTTSTLPSTSTAIATTD 1187
>AL132860-19|CAB60502.1| 159|Caenorhabditis elegans Hypothetical
protein Y56A3A.21 protein.
Length = 159
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -1
Query: 747 ALILAVSPLCIKPPSPXISGTSTRSSNPRFHTPTT 643
AL L S LC K SP S +S +++ FH TT
Sbjct: 7 ALCLVASALCAKCESPKYSASSFSTTDGFFHYKTT 41
>U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore
complex protein protein7 protein.
Length = 1217
Score = 28.3 bits (60), Expect = 6.5
Identities = 20/73 (27%), Positives = 30/73 (41%)
Frame = -1
Query: 702 PXISGTSTRSSNPRFHTPTTPDLTSISINPPDAVLEGVRAGVKASVVIRGSISVSHPLVT 523
P SGT +S +L+S + N P V G +G + I + S + P +
Sbjct: 564 PGGSGTGPKSQPKPSEKQLVSNLSSFASNTPSTVKFGFGSGASTTTTIASTTSNTIPFGS 623
Query: 522 GHG*RGFAPLFSS 484
G APLF +
Sbjct: 624 G---SSVAPLFGA 633
>Z67754-2|CAA91752.2| 677|Caenorhabditis elegans Hypothetical
protein C34E11.2 protein.
Length = 677
Score = 27.9 bits (59), Expect = 8.6
Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 8/88 (9%)
Frame = -2
Query: 686 HQPDH--QIPDSIHQPPQT*HPFPSI---PL-TPY*KEFAPGLKPPX--SSEAPSAYLTP 531
H P+H +P S P P++ P+ TP A L PP SS P TP
Sbjct: 446 HTPEHVCPLPRSFSSTPAAEQFLPTLEGAPVWTPSAVSTASELSPPIPMSSPPPPLPRTP 505
Query: 530 SSLGMAKGVSPPYFQVNDESQASRLISR 447
S PY Q+N+ +R +R
Sbjct: 506 QPNNGLPNASLPYNQINNAGSFTRTAAR 533
>AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical
protein Y57A10A.18b protein.
Length = 1459
Score = 27.9 bits (59), Expect = 8.6
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Frame = -2
Query: 713 SHPPLXFRVHQPDHQI---PDSIHQPPQT*HPFPSIPLTPY*KEFAPGLKPPXSSEAPSA 543
S PL V P Q+ S+ PP P P+ + + P ++EAP+A
Sbjct: 1152 SADPLPNLVKPPPVQVVAPSPSVIPPPILPPPPPAGVIGQQRNPIGGARQVPVAAEAPAA 1211
Query: 542 YLTPSSLGMAKGVSPP 495
PS + +G SPP
Sbjct: 1212 AAAPSRARVPRGPSPP 1227
>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
protein Y57A10A.18a protein.
Length = 1456
Score = 27.9 bits (59), Expect = 8.6
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Frame = -2
Query: 713 SHPPLXFRVHQPDHQI---PDSIHQPPQT*HPFPSIPLTPY*KEFAPGLKPPXSSEAPSA 543
S PL V P Q+ S+ PP P P+ + + P ++EAP+A
Sbjct: 1152 SADPLPNLVKPPPVQVVAPSPSVIPPPILPPPPPAGVIGQQRNPIGGARQVPVAAEAPAA 1211
Query: 542 YLTPSSLGMAKGVSPP 495
PS + +G SPP
Sbjct: 1212 AAAPSRARVPRGPSPP 1227
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,724,904
Number of Sequences: 27780
Number of extensions: 353040
Number of successful extensions: 1174
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1172
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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