Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_T7_B18
(1105 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.22
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 30 0.66
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 27 1.0
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 1.2
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 1.5
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 29 1.5
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 1.5
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 2.0
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 28 2.7
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 6.2
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 6.2
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 26 8.1
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.5 bits (68), Expect = 0.22
Identities = 21/87 (24%), Positives = 26/87 (29%)
Frame = +1
Query: 808 PPXAXXAAXXPXPPPLXXXXPXSXXXXXXPXXXXSXXXPXPXXXSXPPLXXRXXPXXXSX 987
PP + P PPP+ P + P P + P S
Sbjct: 241 PPERVPSLSAPAPPPIPP--PSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSR 298
Query: 988 SXXXTPASXXXXPPPPPPPXPRXXXXP 1068
A+ PPPPPPP R P
Sbjct: 299 VSAAALAANKKRPPPPPPPSRRNRGKP 325
Score = 27.1 bits (57), Expect = 4.7
Identities = 27/110 (24%), Positives = 33/110 (30%), Gaps = 14/110 (12%)
Frame = +1
Query: 808 PPXAXXAAXXPXPPPLXXXXPXSXXXXXXPXXXXSXXXPXPXXXSXPPLXXRXXPXXXSX 987
PP ++ PPP + P S P P S P + P S
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPR-SAPSTGRQPPPLSSSR 383
Query: 988 SXXXTPASXXXXP-------PP-------PPPPXPRXXXXPSARPPSLXP 1095
+ PA P PP PP P P + PPSL P
Sbjct: 384 AVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPP 433
Score = 27.1 bits (57), Expect = 4.7
Identities = 20/96 (20%), Positives = 25/96 (26%)
Frame = +1
Query: 808 PPXAXXAAXXPXPPPLXXXXPXSXXXXXXPXXXXSXXXPXPXXXSXPPLXXRXXPXXXSX 987
PP + A P PP P S PP P +
Sbjct: 342 PPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAP 401
Query: 988 SXXXTPASXXXXPPPPPPPXPRXXXXPSARPPSLXP 1095
+ + PP P P P + PPS P
Sbjct: 402 ALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPP 437
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 309
Score = 29.9 bits (64), Expect = 0.66
Identities = 17/57 (29%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Frame = +1
Query: 922 PXPXXXSXPPLXXRXXPXXXSXSXXXTPASXXXXPPPPPP-PXPRXXXXPSARPPSL 1089
P P S PP+ + P S PA+ PP P P P PP L
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPL 206
Score = 29.5 bits (63), Expect = 0.87
Identities = 18/58 (31%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Frame = +1
Query: 928 PXXXSXPPLXXRXXPXXXSXSXXXTPASXXXXPP--PPPPPXPRXXXXPSARPPSLXP 1095
P S PP P S P++ PP PPPP S+RP S P
Sbjct: 166 PIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAPVANTSSRPSSFAP 223
Score = 27.5 bits (58), Expect = 3.5
Identities = 18/83 (21%), Positives = 25/83 (30%), Gaps = 1/83 (1%)
Frame = +1
Query: 838 PXPP-PLXXXXPXSXXXXXXPXXXXSXXXPXPXXXSXPPLXXRXXPXXXSXSXXXTPASX 1014
P PP P P + S P PP+ P + +P S
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSA 187
Query: 1015 XXXPPPPPPPXPRXXXXPSARPP 1083
P PP P+ P ++ P
Sbjct: 188 PSLPSAVPPMPPKVPPPPLSQAP 210
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 27.1 bits (57), Expect = 4.7
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +1
Query: 1024 PPPPPPPXPRXXXXPSARPPS 1086
PPPPPPP P + P+
Sbjct: 306 PPPPPPPPPSNDFWKDSNEPA 326
Score = 25.4 bits (53), Expect(2) = 1.0
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -3
Query: 611 GGXPPPPPP 585
GG PPPPPP
Sbjct: 303 GGLPPPPPP 311
Score = 22.2 bits (45), Expect(2) = 1.0
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = -3
Query: 602 PPPPPPXXGXF 570
PPPPPP F
Sbjct: 308 PPPPPPPSNDF 318
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.1 bits (62), Expect = 1.2
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +1
Query: 1003 PASXXXXPPPPPPPXPRXXXXPSARPP 1083
PA PPPPPPP P PP
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 27.5 bits (58), Expect = 3.5
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 1024 PPPPPPPXPRXXXXPSARPP 1083
PPPPPPP P PP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPP 781
Score = 26.6 bits (56), Expect = 6.2
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +1
Query: 1003 PASXXXXPPPPPPPXP 1050
P PPPPPPP P
Sbjct: 768 PGVAGAGPPPPPPPPP 783
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.7 bits (61), Expect = 1.5
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +1
Query: 1000 TPASXXXXPPPPPPPXPRXXXXPSARPPSL 1089
TP PPPP P PSA PP L
Sbjct: 1706 TPPPPPMSVPPPPSAPPMPAGPPSAPPPPL 1735
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 28.7 bits (61), Expect = 1.5
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +1
Query: 1024 PPPPPPPXPRXXXXPSARP 1080
PPPPPPP P +RP
Sbjct: 370 PPPPPPPPELLNHSPKSRP 388
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.2 bits (55), Expect = 8.1
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +1
Query: 1024 PPPPPPPXP 1050
PPPPPPP P
Sbjct: 189 PPPPPPPPP 197
Score = 25.4 bits (53), Expect(2) = 1.5
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +1
Query: 1003 PASXXXXPPPPPPP 1044
P+ PPPPPPP
Sbjct: 184 PSDYNPPPPPPPPP 197
Score = 21.4 bits (43), Expect(2) = 1.5
Identities = 9/24 (37%), Positives = 10/24 (41%)
Frame = +1
Query: 1024 PPPPPPPXPRXXXXPSARPPSLXP 1095
P P PPP P P + S P
Sbjct: 234 PLPAPPPPPPPTLPPQSTNTSQLP 257
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.3 bits (60), Expect = 2.0
Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Frame = +1
Query: 1024 PP--PPPPPXPRXXXXPSARPPSLXP 1095
PP PPPPP P PS PP P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 26.2 bits (55), Expect = 8.1
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +3
Query: 1014 PXXPPPPPXPXPPXXXXPXRP 1076
P PPPPP PP P P
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPP 29
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 27.9 bits (59), Expect = 2.7
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +1
Query: 1024 PPPPPPPXPRXXXXPSARPPSLXP 1095
PPPPPP PSA P S P
Sbjct: 1882 PPPPPPMALPKAGPPSAAPTSALP 1905
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 26.6 bits (56), Expect = 6.2
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +1
Query: 1006 ASXXXXPPPPPPPXPR 1053
AS PPPP PP PR
Sbjct: 216 ASPVKKPPPPAPPKPR 231
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 6.2
Identities = 23/101 (22%), Positives = 26/101 (25%), Gaps = 5/101 (4%)
Frame = +1
Query: 808 PPXAXXAAXXPXPPPLXXXXPXSXXXXXXPXXXXSXXXPX-PXXXSXPPLXXRXXPXXX- 981
PP + P P P P P S P P PP+
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPV 1171
Query: 982 ---SXSXXXTPASXXXXPPPPPPPXPRXXXXPSARPPSLXP 1095
S P PP PPP PS P + P
Sbjct: 1172 PAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPP 1212
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.2 bits (55), Expect = 8.1
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +1
Query: 1024 PPPPPPPXP 1050
PPPPPPP P
Sbjct: 945 PPPPPPPPP 953
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.150 0.540
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,119,312
Number of Sequences: 5004
Number of extensions: 29665
Number of successful extensions: 286
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 583709326
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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