Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_B18
         (1105 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   0.16 
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    25   1.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect(2) = 0.16
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 1003 PASXXXXPPPPPP 1041
            P S    PPPPPP
Sbjct: 1852 PVSGSPEPPPPPP 1864



 Score = 22.2 bits (45), Expect(2) = 0.16
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 1027 PPPPPPXPR 1053
            P PPPP PR
Sbjct: 1857 PEPPPPPPR 1865


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor protein.
          Length = 168

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +1

Query: 1027 PPPPPPXPRXXXXPSARPPSLXP 1095
            P P PP PR    P A P +  P
Sbjct: 107  PQPRPPHPRLRREPEAEPGNNRP 129



 Score = 25.0 bits (52), Expect = 1.2
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +1

Query: 1027 PPPPPPXPRXXXXPSARPPSLXP 1095
            P P PP PR    P A P +  P
Sbjct: 133  PQPRPPHPRLRREPEAEPGNNRP 155


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 1024 PPPPPPP 1044
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.8
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 1024 PPPPPPP 1044
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 1027 PPPPPPXP 1050
            PPPPPP P
Sbjct: 1355 PPPPPPPP 1362



 Score = 22.6 bits (46), Expect = 6.4
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 602  PPPPPPXXG 576
            PPPPPP  G
Sbjct: 1357 PPPPPPSSG 1365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.150    0.540 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,915
Number of Sequences: 438
Number of extensions: 6229
Number of successful extensions: 28
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 37114308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)