Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_T7_B15
(776 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 161 1e-40
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 75 9e-15
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 72 1e-13
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 70 4e-13
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 58 1e-09
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 43 6e-05
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 42 1e-04
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 40 4e-04
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 37 0.004
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.7
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 27 2.3
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 6.9
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 6.9
SPAC5H10.05c |||FAD binding oxidoreductasde |Schizosaccharomyces... 25 9.2
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch... 25 9.2
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 161 bits (391), Expect = 1e-40
Identities = 81/122 (66%), Positives = 88/122 (72%)
Frame = -3
Query: 693 KFRCPEAXFQPSFLVWKLAASTRPHITPS*SATWTSVRTCTPTPYCSGGTTMYPGIADRM 514
+FR PEA FQPS L + A + SGGTTMYPGIADRM
Sbjct: 254 RFRAPEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRM 313
Query: 513 QKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 334
QKEI ALAPS+MK+KI+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IV+RK
Sbjct: 314 QKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVYRK 373
Query: 333 CF 328
CF
Sbjct: 374 CF 375
Score = 64.1 bits (149), Expect = 2e-11
Identities = 32/66 (48%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Frame = -2
Query: 751 SSLENFTNFPTVRS-SLSETKIPLPRGXXPTXVLGMEACGIHETTYNSIMKCDVDIRKDL 575
SSLE P + ++ + P LG+E GIHE TYNSIMKCDVDIRKDL
Sbjct: 234 SSLEKSYELPDGQVITIGNERFRAPEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDL 293
Query: 574 YANTVL 557
Y N V+
Sbjct: 294 YGNVVM 299
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 75.4 bits (177), Expect = 9e-15
Identities = 46/130 (35%), Positives = 68/130 (52%), Gaps = 11/130 (8%)
Frame = -3
Query: 711 HHYRKRKFRCPEAXFQPSFLVWKLAASTRPHITPS*-SATWTSVRTCTP---TPYCS--- 553
H + + +FR E F PSF + A +T P + + S+ C +P +
Sbjct: 289 HKFGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELRSPLLNNIV 348
Query: 552 --GGTTMYPGIADRMQKEITALAP-STMKIKIIAPPER-KYSVWIGGSILASLSTFQQMW 385
GGT++ PG+++R+Q E+ LA S + + +VW GGSILASL FQ +W
Sbjct: 349 VTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQHLW 408
Query: 384 ISKQEYDESG 355
+SKQEYDE G
Sbjct: 409 VSKQEYDEVG 418
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 71.7 bits (168), Expect = 1e-13
Identities = 35/80 (43%), Positives = 55/80 (68%), Gaps = 6/80 (7%)
Frame = -3
Query: 552 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLSTFQQMWI 382
GGT++ G + R+Q E++ L P + ++KI A ER Y+ W+GGSIL+SL TF Q+WI
Sbjct: 354 GGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSLGTFHQLWI 412
Query: 381 SKQEYDESGP---SIVHRKC 331
S+QEY+E G +++ ++C
Sbjct: 413 SRQEYEEHGSDRLALIEKRC 432
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 637 GIHETTYNSIMKCDVDIRKDLYANTVL 557
GI + N I +CDVDIR L N ++
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIV 352
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 69.7 bits (163), Expect = 4e-13
Identities = 31/76 (40%), Positives = 53/76 (69%)
Frame = -3
Query: 555 SGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISK 376
SGG+T+ G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF+++ I+
Sbjct: 305 SGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITS 364
Query: 375 QEYDESGPSIVHRKCF 328
+EY ++ +++ R+ F
Sbjct: 365 EEY-KNDQNVIFRRRF 379
Score = 37.5 bits (83), Expect = 0.002
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = -2
Query: 658 VLGMEACGIHETTYNSIMKCDVDIRKDLYANTVL 557
++G EA G+H + SI+ D+D+R LY+N VL
Sbjct: 271 MMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVL 304
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 58.0 bits (134), Expect = 1e-09
Identities = 41/126 (32%), Positives = 64/126 (50%), Gaps = 13/126 (10%)
Frame = -3
Query: 693 KFRCPEAXFQPSFLVWKLAASTRPHITPS*SATWTSVRTCTPTPYC-SGGTTMYPGIADR 517
++ CPE FQP LV I + A +R SGG++MY G+ R
Sbjct: 254 RYECPECLFQPH-LVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSR 312
Query: 516 MQKEITAL--------APSTM---KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQ 373
++KEI L P+ + K+KI P R+++V+IGG++LA ++ MW+SK
Sbjct: 313 LEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKA 372
Query: 372 EYDESG 355
E++E G
Sbjct: 373 EWEEYG 378
Score = 31.1 bits (67), Expect = 0.18
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -2
Query: 658 VLGMEACGIHETTYNSIMKCDVDIRKDLYANTVL 557
++G E G+ E +++I DVDIRK LY VL
Sbjct: 266 LVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVL 299
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 42.7 bits (96), Expect = 6e-05
Identities = 22/73 (30%), Positives = 37/73 (50%)
Frame = -3
Query: 552 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 373
GG +PG R+ E+ +LAP+ ++K+ P + W S + L + I++
Sbjct: 327 GGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRS 385
Query: 372 EYDESGPSIVHRK 334
EY E G +I+ RK
Sbjct: 386 EYSEHGANIMTRK 398
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 41.9 bits (94), Expect = 1e-04
Identities = 26/122 (21%), Positives = 47/122 (38%)
Frame = -3
Query: 708 HYRKRKFRCPEAXFQPSFLVWKLAASTRPHITPS*SATWTSVRTCTPTPYCSGGTTMYPG 529
H + R PE F PS + A + + + +GG PG
Sbjct: 590 HLNVEQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPG 649
Query: 528 IADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPS 349
+ R+++E+T++ P I + W G S + F+ ++++EY E GP
Sbjct: 650 METRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPE 709
Query: 348 IV 343
+
Sbjct: 710 YI 711
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 39.9 bits (89), Expect = 4e-04
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 14/87 (16%)
Frame = -3
Query: 555 SGGTTMYPGIADRMQKEITALAPSTMK--------------IKIIAPPERKYSVWIGGSI 418
SGG+T++ +R+Q+++ + + + +I+ ++ +VW GGS+
Sbjct: 333 SGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSL 392
Query: 417 LASLSTFQQMWISKQEYDESGPSIVHR 337
LA F +K +Y+E G SI R
Sbjct: 393 LAQTPEFGSYCHTKADYEEYGASIARR 419
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 36.7 bits (81), Expect = 0.004
Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = -3
Query: 552 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLSTFQQMWI 382
GG +PG A +++ I + + I +I PP + ++ W G I + ++WI
Sbjct: 537 GGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYNRIRIVSELWI 596
Query: 381 SKQEYDESGPSIVHRK 334
++ G ++ K
Sbjct: 597 KNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -3
Query: 435 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 334
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 27.5 bits (58), Expect = 2.3
Identities = 19/65 (29%), Positives = 32/65 (49%)
Frame = -2
Query: 562 VLFRWYHHVPWNRRPYAKGNHSSRPIDNED*DHCSSREEVLRMDRWIDPRLPLYLPTDVD 383
VL RWY PW + KG+ + +E + SSR + + W+D YL +++D
Sbjct: 480 VLGRWYE--PW----FVKGDLN---YTSEVKERTSSRLSAVGSENWVDDDFYEYLLSEID 530
Query: 382 LETGV 368
+ + V
Sbjct: 531 MVSAV 535
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 6.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 443 TPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPP 348
TP + PPS+PS+R R S ++ APP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 6.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 510 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 400
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPAC5H10.05c |||FAD binding oxidoreductasde |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 196
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/43 (23%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = -2
Query: 634 IHETTYNSIMKCDVDIRKDLYANTVLFR---WYHHVPWNRRPY 515
+ ET + + ++ K L+AN ++++ W+ PW + Y
Sbjct: 38 VQETVVDEGYDENTEVEKILWANVIIYQWPGWWMGTPWKLKRY 80
>SPBC4F6.09 |str1||siderophore-iron transporter Str1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 554 EQYGVGVQVLTDVHVALHDGVICGLVDAA 640
EQY G Q++ + V + GVI L+ A
Sbjct: 456 EQYNWGYQIMPQIIVGIGGGVIANLLTVA 484
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,839,221
Number of Sequences: 5004
Number of extensions: 58611
Number of successful extensions: 195
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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