Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_B15
         (776 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             138   7e-35
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    24   1.4  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  138 bits (333), Expect = 7e-35
 Identities = 70/105 (66%), Positives = 74/105 (70%)
 Frame = -3

Query: 693 KFRCPEAXFQPSFLVWKLAASTRPHITPS*SATWTSVRTCTPTPYCSGGTTMYPGIADRM 514
           +FRCPEA FQPSFL  +                    +        SGGTTMYPGIADRM
Sbjct: 29  RFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRM 88

Query: 513 QKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWIS 379
           QKEITALAPSTMKIKIIAPPE+KYSVWIGGSILASLSTFQQMWIS
Sbjct: 89  QKEITALAPSTMKIKIIAPPEKKYSVWIGGSILASLSTFQQMWIS 133



 Score = 78.6 bits (185), Expect = 6e-17
 Identities = 40/68 (58%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
 Frame = -2

Query: 757 SXSSLENFTNFPTVRS-SLSETKIPLPRGXXPTXVLGMEACGIHETTYNSIMKCDVDIRK 581
           S SSLE     P  +  ++   +   P        LGMEACGIHETTYNSIMKCDVDIRK
Sbjct: 7   SSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRK 66

Query: 580 DLYANTVL 557
           DLYANTVL
Sbjct: 67  DLYANTVL 74


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -3

Query: 666 QPSFLVWKLAASTRPHITPS*SATWTSV 583
           +PS+  W+L A+  PH   + +  +T +
Sbjct: 8   RPSYCTWELNATNSPHTCRTKNGDYTKI 35


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,695
Number of Sequences: 438
Number of extensions: 4577
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)