Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_T7_B13
(780 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 131 9e-32
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 130 3e-31
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 38 0.002
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 28 1.3
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 28 1.7
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 5.3
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 26 7.0
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ... 25 9.2
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 131 bits (317), Expect = 9e-32
Identities = 61/94 (64%), Positives = 73/94 (77%)
Frame = -2
Query: 614 LIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLARE 435
++V DP D Q I EAS+VNIPVIALC+TDS L VDIAIP N K SIGL+W+LLARE
Sbjct: 124 IVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLARE 183
Query: 434 VLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQ 333
VLR+RG L R WDV+ DL+FYRDPEE E++E+
Sbjct: 184 VLRVRGTLSRSAPWDVMPDLYFYRDPEEVEREEE 217
Score = 37.5 bits (83), Expect = 0.002
Identities = 18/39 (46%), Positives = 21/39 (53%)
Frame = -1
Query: 774 IXEPRXXFVI*SRPFVQRXXXNFXAHTGVTXIAXRFTPG 658
I P V+ +R + R F AHTG T IA RFTPG
Sbjct: 70 IENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPG 108
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 130 bits (313), Expect = 3e-31
Identities = 61/95 (64%), Positives = 73/95 (76%)
Frame = -2
Query: 614 LIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLARE 435
+IV DP D Q I EAS+VNIPVIALC+TDS L VD+AIP N K SIGL W+LLARE
Sbjct: 125 IIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLARE 184
Query: 434 VLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 330
VLRLRG + R W+V+ DL+FYRDPEE E++E+Q
Sbjct: 185 VLRLRGNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219
Score = 42.3 bits (95), Expect = 7e-05
Identities = 21/39 (53%), Positives = 22/39 (56%)
Frame = -1
Query: 774 IXEPRXXFVI*SRPFVQRXXXNFXAHTGVTXIAXRFTPG 658
I P VI SRP+ R F AHTG T IA RFTPG
Sbjct: 71 IENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPG 109
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 37.9 bits (84), Expect = 0.002
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = -2
Query: 614 LIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 438
+++L+P ++ EA ++P I + +TD+ R V IP N S L+ LL+R
Sbjct: 183 MVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 575 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 465
T A + + LC+ +S RF D+A+ NTK +H I
Sbjct: 75 TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 27.9 bits (59), Expect = 1.7
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = -3
Query: 643 IQAAFRELVS*LYWTLHKTINPLLKLHMSTFL*LLCATQTP-H*DLWTLLSHATPSLPTL 467
++A FR + + +L+K + PLL + F LL + +TP DL+T L P +L
Sbjct: 721 LRALFRGIGGGRFESLYKEVMPLLHALLEAFNSLLISARTPKEKDLFTELCLTIPVRLSL 780
Query: 466 LV 461
L+
Sbjct: 781 LL 782
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 467 IGLMWWLLAREVLRLRGVLPRDQRWD 390
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = -3
Query: 412 FPVTSAGML--WLICSSTVTLKKVKRM 338
FP S ++ WL +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506
>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
Its3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 742
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 329 LVVHPFHFLQGHGRRTNQPQHPSAGHGEAHHEASTLHVPTTTTS 460
LV+ PF G+R N+ Q +AG+ +++ +L+ T +S
Sbjct: 667 LVLKPFPLKPQDGQRVNKQQSVNAGNVRTNNKHGSLNNNTAPSS 710
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,822,879
Number of Sequences: 5004
Number of extensions: 54382
Number of successful extensions: 136
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -