Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_B12
         (814 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical pr...   169   2e-42
Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p...    30   1.7  
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.      30   1.7  
AF039043-7|AAY86190.1|  103|Caenorhabditis elegans Hypothetical ...    29   3.0  
U39742-3|AAY86225.1|  188|Caenorhabditis elegans Hypothetical pr...    28   6.9  
AL032621-5|CAA21492.2|  404|Caenorhabditis elegans Hypothetical ...    28   6.9  
AF016677-7|AAB66144.1|  292|Caenorhabditis elegans Hypothetical ...    28   6.9  
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ...    28   9.1  
AL033510-7|CAA22069.1|  124|Caenorhabditis elegans Hypothetical ...    28   9.1  
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.    28   9.1  

>Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical
           protein B0393.1 protein.
          Length = 276

 Score =  169 bits (412), Expect = 2e-42
 Identities = 76/134 (56%), Positives = 98/134 (73%), Gaps = 5/134 (3%)
 Frame = -2

Query: 720 EFAAHTGXTXIAXRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALC 541
           +FAAHTG T I  RF+PG  TNQIQ  F+EPRLL++ DP  DHQ +TEASYV +PVI+  
Sbjct: 89  KFAAHTGATAIFGRFSPGCLTNQIQKTFKEPRLLVISDPRIDHQAVTEASYVGVPVISFV 148

Query: 540 NTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRW-----DVVVDLFF 376
           NT+SPL+ +DI +PCN K   SIGLMWW+LARE+L LRG + R   +     +++ DL+F
Sbjct: 149 NTESPLKLIDIGVPCNNKGERSIGLMWWMLAREILILRGKISRQTGFVLEGKEIMPDLYF 208

Query: 375 YRDPEESEKDEQQA 334
           YRDP E+EK+E  A
Sbjct: 209 YRDPTETEKEETGA 222


>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
            protein C47D12.1c protein.
          Length = 4053

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -3

Query: 677  SHQVL-LLTRSKLHSVNLVS*LYWTLHKTINPLLKLHMSTFL*LLCATQTPH 525
            SH+V+  + + +LHS+NL + LYW L + +  +     S F+ +LC     H
Sbjct: 3338 SHEVMNRVIKKQLHSLNLFNWLYW-LPQLVTDVRYKPNSNFVLILCKMAAAH 3388


>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical protein
            C47D12.1b protein.
          Length = 4061

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -3

Query: 677  SHQVL-LLTRSKLHSVNLVS*LYWTLHKTINPLLKLHMSTFL*LLCATQTPH 525
            SH+V+  + + +LHS+NL + LYW L + +  +     S F+ +LC     H
Sbjct: 3349 SHEVMNRVIKKQLHSLNLFNWLYW-LPQLVTDVRYKPNSNFVLILCKMAAAH 3399


>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical protein
            C47D12.1a protein.
          Length = 4064

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -3

Query: 677  SHQVL-LLTRSKLHSVNLVS*LYWTLHKTINPLLKLHMSTFL*LLCATQTPH 525
            SH+V+  + + +LHS+NL + LYW L + +  +     S F+ +LC     H
Sbjct: 3349 SHEVMNRVIKKQLHSLNLFNWLYW-LPQLVTDVRYKPNSNFVLILCKMAAAH 3399


>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
          Length = 4064

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -3

Query: 677  SHQVL-LLTRSKLHSVNLVS*LYWTLHKTINPLLKLHMSTFL*LLCATQTPH 525
            SH+V+  + + +LHS+NL + LYW L + +  +     S F+ +LC     H
Sbjct: 3349 SHEVMNRVIKKQLHSLNLFNWLYW-LPQLVTDVRYKPNSNFVLILCKMAAAH 3399


>AF039043-7|AAY86190.1|  103|Caenorhabditis elegans Hypothetical
           protein F39C12.4 protein.
          Length = 103

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -1

Query: 223 CCTRCSSCFWSTPCSRRMVCP 161
           CCT    CF ST CS   VCP
Sbjct: 53  CCTN-EECFMSTECSYSAVCP 72


>U39742-3|AAY86225.1|  188|Caenorhabditis elegans Hypothetical
           protein C25F6.8 protein.
          Length = 188

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 543 CNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVL 436
           CNTD+  R +     CNT   + +G+ + L+AR ++
Sbjct: 49  CNTDAEFRLIQCCSSCNT---NGVGIAYDLVARSLV 81


>AL032621-5|CAA21492.2|  404|Caenorhabditis elegans Hypothetical
           protein Y45F3A.8 protein.
          Length = 404

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = -1

Query: 571 ICQHSCDCFVQHRLPTKICGHCYPM---QHQVFPLYWFD 464
           +C+HS    +      K CGHC PM   +HQ  P +  D
Sbjct: 342 LCEHSRYKTLMENYCPKACGHCIPMCRDRHQNCPQFHED 380


>AF016677-7|AAB66144.1|  292|Caenorhabditis elegans Hypothetical
           protein ZK1240.8 protein.
          Length = 292

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/46 (26%), Positives = 19/46 (41%)
 Frame = -2

Query: 759 CXFITALRSACCXEFAAHTGXTXIAXRFTPGAFTNQIQAAFREPRL 622
           C  I  L    C EF  HTG T +      G   + ++   ++ +L
Sbjct: 106 CPSIDKLMCRTCEEFGVHTGHTKVLMSVEAGKIRDVLECRLKQMKL 151


>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
            protein.
          Length = 1829

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = +3

Query: 174  LLEQGVLQKQELQRVQQAGRYLQP--MKPLAPVF 269
            L+EQ ++ +++L+R   A R+LQP  + PLA  F
Sbjct: 1591 LIEQSLVIEEQLRRAAHANRHLQPDNVGPLAQRF 1624


>AL033510-7|CAA22069.1|  124|Caenorhabditis elegans Hypothetical
           protein Y40H7A.11 protein.
          Length = 124

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 492 TKSSHSIGLMWWLLA 448
           T+  H IG+MWWL A
Sbjct: 72  TRVEHKIGIMWWLCA 86


>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
          Length = 1829

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = +3

Query: 174  LLEQGVLQKQELQRVQQAGRYLQP--MKPLAPVF 269
            L+EQ ++ +++L+R   A R+LQP  + PLA  F
Sbjct: 1591 LIEQSLVIEEQLRRAAHANRHLQPDNVGPLAQRF 1624


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,287,609
Number of Sequences: 27780
Number of extensions: 327300
Number of successful extensions: 878
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)