Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_T7_B08
(967 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1136 + 24218601-24218734,24218769-24219906 26 1.8
06_01_1181 + 10148653-10149405 31 1.8
01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225 26 5.0
08_02_1084 - 24232968-24234779 29 7.3
01_03_0005 + 11568545-11569119,11569179-11569191 29 7.3
06_02_0257 - 13533689-13533714,13533799-13533925,13534013-135341... 25 8.1
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 28 9.7
01_07_0239 + 42222024-42222133,42222220-42222301,42222396-422224... 28 9.7
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 25.8 bits (54), Expect(2) = 1.8
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -1
Query: 430 PPGGXXXXXXXXPPXXGGGG 371
PPGG PP GGGG
Sbjct: 160 PPGGGRGGALGRPPGGGGGG 179
Score = 23.4 bits (48), Expect(2) = 1.8
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -1
Query: 586 PXXPPXGGGGGG 551
P PP GGGGG
Sbjct: 118 PSLPPGAGGGGG 129
>06_01_1181 + 10148653-10149405
Length = 250
Score = 30.7 bits (66), Expect = 1.8
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +3
Query: 498 GGXGGGXGXXXXXXXXXXPPPPPP 569
GG GGG G PPPPPP
Sbjct: 128 GGGGGGRGAAAAPAVVPPPPPPPP 151
Score = 28.3 bits (60), Expect = 9.7
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +3
Query: 501 GXGGGXGXXXXXXXXXXPPPPPP 569
G GGG G PPPPPP
Sbjct: 127 GGGGGGGRGAAAAPAVVPPPPPP 149
>01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225
Length = 467
Score = 26.2 bits (55), Expect(2) = 5.0
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = +3
Query: 486 KKNXGGXGGGXGXXXXXXXXXXPPPPPP 569
K + G GGG G PPPP P
Sbjct: 15 KSSSTGGGGGGGGGFSPTAAKPPPPPSP 42
Score = 21.4 bits (43), Expect(2) = 5.0
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = +3
Query: 552 PPPPPPXGGXXG 587
PPPPP G G
Sbjct: 59 PPPPPAAAGAEG 70
>08_02_1084 - 24232968-24234779
Length = 603
Score = 28.7 bits (61), Expect = 7.3
Identities = 17/54 (31%), Positives = 19/54 (35%)
Frame = +3
Query: 426 GGXXXRGGAXXXXXXXFFL*KKNXGGXGGGXGXXXXXXXXXXPPPPPPXGGXXG 587
GG RGG + + GG GG G PPP P GG G
Sbjct: 321 GGNWGRGGGGMGRGPAGNM-RNRMGGPAGGRGIMGNGGMVAPPPPMLPPGGMMG 373
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 28.7 bits (61), Expect = 7.3
Identities = 20/74 (27%), Positives = 23/74 (31%), Gaps = 8/74 (10%)
Frame = +3
Query: 372 PPPPXX--------GGXXXXXXXXPPGGXXXRGGAXXXXXXXFFL*KKNXGGXGGGXGXX 527
PPPP GG PP GG+ ++ GG GGG
Sbjct: 70 PPPPSYPSGGGGGGGGGTVMYTSPPPPYSGGGGGSSTGGGGIYYPPPTGGGGGGGGGWQQ 129
Query: 528 XXXXXXXXPPPPPP 569
P PPPP
Sbjct: 130 GGGGGGAYPTPPPP 143
>06_02_0257 -
13533689-13533714,13533799-13533925,13534013-13534121,
13534193-13534272,13534758-13534979,13536070-13536318,
13537032-13537484,13539834-13540556
Length = 662
Score = 24.6 bits (51), Expect(2) = 8.1
Identities = 10/24 (41%), Positives = 10/24 (41%)
Frame = +3
Query: 498 GGXGGGXGXXXXXXXXXXPPPPPP 569
GG G G PPPPPP
Sbjct: 46 GGGGDRRGGFQLPPDAAPPPPPPP 69
Score = 22.2 bits (45), Expect(2) = 8.1
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = +3
Query: 552 PPPPPPXGGXXG 587
PPPPPP G
Sbjct: 66 PPPPPPSSAAAG 77
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 28.3 bits (60), Expect = 9.7
Identities = 23/77 (29%), Positives = 23/77 (29%), Gaps = 8/77 (10%)
Frame = +3
Query: 372 PPPPXXGGXXXXXXXXPPGGXXXRGGAXXXXXXXFFL*KKNXGGXGGGXGXXXXXXXXXX 551
PPPP GG PP G RGG GG G
Sbjct: 1149 PPPPPVGGLGGPPAPPPPAG--FRGGTPPPNAHGGVAPPPPPPRGHGGVGGPPTPPGAPA 1206
Query: 552 PP--------PPPPXGG 578
PP PPPP GG
Sbjct: 1207 PPMPPGVPGGPPPPPGG 1223
>01_07_0239 +
42222024-42222133,42222220-42222301,42222396-42222486,
42222702-42222814,42222912-42222984,42223080-42223178,
42223201-42223406,42223693-42223832,42223912-42223969,
42224067-42224137,42224207-42224741
Length = 525
Score = 28.3 bits (60), Expect = 9.7
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = +3
Query: 492 NXGGXGGGXGXXXXXXXXXXPPPPPPXGGXXGXXXG 599
N GG GGG G PPP P GG G G
Sbjct: 444 NRGGQGGGYGSGPYPQQGRGPPPYP--GGGMGGAGG 477
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,883,052
Number of Sequences: 37544
Number of extensions: 387364
Number of successful extensions: 3730
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3531
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2799822860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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