Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_B08
         (967 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical pr...    39   0.005
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    31   0.93 
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    31   0.93 
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    31   0.93 
Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical pr...    31   1.6  
Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical pr...    31   1.6  
AC024809-7|AAF59540.1|  315|Caenorhabditis elegans Hypothetical ...    31   1.6  
U64857-7|AAC25861.2|  373|Caenorhabditis elegans Groundhog (hedg...    30   2.1  
U00058-3|AAD31933.1|  162|Caenorhabditis elegans Ground-like (gr...    27   2.9  
AF068713-16|AAD34663.1|  156|Caenorhabditis elegans Ground-like ...    29   5.0  
Z77662-15|CAI79240.1|  255|Caenorhabditis elegans Hypothetical p...    28   8.7  
Z77662-14|CAI79239.1|  245|Caenorhabditis elegans Hypothetical p...    28   8.7  
AF068713-14|AAK73895.1|  172|Caenorhabditis elegans Ground-like ...    28   8.7  

>Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical
           protein E02A10.2 protein.
          Length = 385

 Score = 39.1 bits (87), Expect = 0.005
 Identities = 26/77 (33%), Positives = 26/77 (33%), Gaps = 1/77 (1%)
 Frame = +3

Query: 372 PPPPXXGGXXXXXXXXPPGGXXXRGGAXXXXXXXFFL*KKNXGGXGGGXGXXXXXXXXXX 551
           PPPP  GG          GG    GG                GG GGG G          
Sbjct: 56  PPPPACGGGCGGGGGGCGGGGGGCGGGGGCGGGG-----GGCGGGGGGCGGGGGCGGGCA 110

Query: 552 PPPPPP-XGGXXGXXXG 599
           PPPPPP  GG  G   G
Sbjct: 111 PPPPPPACGGGCGGGGG 127



 Score = 31.1 bits (67), Expect = 1.2
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = +3

Query: 498 GGXGGGXGXXXXXXXXXXPPPPPPXGGXXGXXXG 599
           GG GG  G          PPPPP  GG  G   G
Sbjct: 37  GGGGGCGGGGGCGGGCAPPPPPPACGGGCGGGGG 70


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 22/70 (31%), Positives = 23/70 (32%)
 Frame = -2

Query: 462 VGGGPPPXXXPPPAXXXXXXXXXPPXXGGGGFXXXVFXXXPXKKXPFKKKKXGXKXFPPP 283
           + GGPPP   PPP          PP    GG         P    P      G    PPP
Sbjct: 722 ITGGPPP--PPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP-----GGCPPPPPP 774

Query: 282 XXPXGXKKPP 253
             P G K  P
Sbjct: 775 PPPGGFKGGP 784


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 22/70 (31%), Positives = 23/70 (32%)
 Frame = -2

Query: 462 VGGGPPPXXXPPPAXXXXXXXXXPPXXGGGGFXXXVFXXXPXKKXPFKKKKXGXKXFPPP 283
           + GGPPP   PPP          PP    GG         P    P      G    PPP
Sbjct: 722 ITGGPPP--PPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP-----GGCPPPPPP 774

Query: 282 XXPXGXKKPP 253
             P G K  P
Sbjct: 775 PPPGGFKGGP 784


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 22/70 (31%), Positives = 23/70 (32%)
 Frame = -2

Query: 462 VGGGPPPXXXPPPAXXXXXXXXXPPXXGGGGFXXXVFXXXPXKKXPFKKKKXGXKXFPPP 283
           + GGPPP   PPP          PP    GG         P    P      G    PPP
Sbjct: 305 ITGGPPP--PPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP-----GGCPPPPPP 357

Query: 282 XXPXGXKKPP 253
             P G K  P
Sbjct: 358 PPPGGFKGGP 367


>Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = +3

Query: 498 GGXGGGXGXXXXXXXXXXPPPPPPXGGXXGXXXG 599
           GG GGG G          PPP P  GG  G   G
Sbjct: 32  GGCGGGCGGGCGGGGGCAPPPAPCGGGCGGGGGG 65


>Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = +3

Query: 498 GGXGGGXGXXXXXXXXXXPPPPPPXGGXXGXXXG 599
           GG GGG G          PPP P  GG  G   G
Sbjct: 32  GGCGGGCGGGCGGGGGCAPPPAPCGGGCGGGGGG 65


>AC024809-7|AAF59540.1|  315|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.9 protein.
          Length = 315

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 14/28 (50%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
 Frame = +3

Query: 498 GGXGGGXGXXXXXXXXXX-PPPPPPXGG 578
           GG GGG G           PPPPPP GG
Sbjct: 193 GGMGGGGGSGGSGGGSGRFPPPPPPYGG 220


>U64857-7|AAC25861.2|  373|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 8 protein.
          Length = 373

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 16/46 (34%), Positives = 17/46 (36%)
 Frame = +3

Query: 441 RGGAXXXXXXXFFL*KKNXGGXGGGXGXXXXXXXXXXPPPPPPXGG 578
           +GG        FFL     G  GGG            PPPPPP  G
Sbjct: 195 KGGPGGFSPLSFFLNGGLGGTGGGGNNGFFVPVPVVIPPPPPPPPG 240


>U00058-3|AAD31933.1|  162|Caenorhabditis elegans Ground-like (grd
           related) protein22 protein.
          Length = 162

 Score = 26.6 bits (56), Expect(2) = 2.9
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +3

Query: 501 GXGGGXGXXXXXXXXXXPPPPPPXG 575
           G GGG G          PPPPP  G
Sbjct: 24  GGGGGGGGCAPAAPACAPPPPPMCG 48



 Score = 21.8 bits (44), Expect(2) = 2.9
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 552 PPPPPPXGGXXGXXXG 599
           PPPPPP     G   G
Sbjct: 52  PPPPPPPPPMCGCGCG 67


>AF068713-16|AAD34663.1|  156|Caenorhabditis elegans Ground-like
           (grd related) protein31 protein.
          Length = 156

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = +3

Query: 498 GGXGGGXGXXXXXXXXXXPPPPPPXGGXXG 587
           GG  GG G          PPPPP  GG  G
Sbjct: 30  GGGCGGCGGGCGGGCGCAPPPPPCCGGGCG 59


>Z77662-15|CAI79240.1|  255|Caenorhabditis elegans Hypothetical
           protein F47B8.14 protein.
          Length = 255

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +3

Query: 498 GGXGGGXGXXXXXXXXXXPPPPPP 569
           GG GGG            PPPPPP
Sbjct: 23  GGGGGGYSGGGGGGGDAAPPPPPP 46


>Z77662-14|CAI79239.1|  245|Caenorhabditis elegans Hypothetical
           protein F47B8.13 protein.
          Length = 245

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +3

Query: 498 GGXGGGXGXXXXXXXXXXPPPPPP 569
           GG GGG            PPPPPP
Sbjct: 20  GGGGGGEAGYSGGAGVEAPPPPPP 43


>AF068713-14|AAK73895.1|  172|Caenorhabditis elegans Ground-like
           (grd related) protein29 protein.
          Length = 172

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +3

Query: 501 GXGGGXGXXXXXXXXXXPPPPPP 569
           G GGG G          PPPPPP
Sbjct: 50  GGGGGCGYGGGYGCGIPPPPPPP 72


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,678,672
Number of Sequences: 27780
Number of extensions: 212918
Number of successful extensions: 1419
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1270
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2500474882
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)