Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_B07
         (870 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0658 - 20366559-20367562,20367745-20367937                       30   2.8  
07_01_0004 + 35300-35533,35617-35732,39044-39287,39451-40578,406...    29   4.8  
02_05_0040 + 25341418-25341810                                         29   4.8  
12_02_0954 - 24757417-24758214                                         29   6.4  
06_01_0464 - 3300356-3300673,3300757-3301244,3301315-3302137           29   6.4  
10_02_0113 + 5410413-5410471,5411330-5413309,5413535-5413594,541...    28   8.5  
07_03_0918 - 22581625-22581687,22581773-22581868,22581980-225822...    28   8.5  
06_03_1007 + 26869731-26870429,26871262-26871387                       28   8.5  

>07_03_0658 - 20366559-20367562,20367745-20367937
          Length = 398

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 18/63 (28%), Positives = 25/63 (39%)
 Frame = +1

Query: 169 VVVGSRHRMRMILRQHGFGQCVEQRPLVPEVPVKRRLLNPQPFRQFACRQTVYADLVQQV 348
           V+ G+ H + M L +HG    V  + L+P        L    FRQ       + DL   V
Sbjct: 251 VIPGTEHALNMRLTEHGLDGHVSIKDLIPLAAANADELLSDAFRQLGLAGVEWNDLFWVV 310

Query: 349 QGG 357
             G
Sbjct: 311 HPG 313


>07_01_0004 +
           35300-35533,35617-35732,39044-39287,39451-40578,
           40657-40833
          Length = 632

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 535 YRTSLYKKAGWYRSGIPRALCDIHCAGADSLSLISWW 425
           Y+TSL  + G ++ G+PR  C    AG D L     W
Sbjct: 285 YQTSLSPRCGAFKDGVPRMSC-AKIAGRDKLKRRGDW 320


>02_05_0040 + 25341418-25341810
          Length = 130

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +3

Query: 114 RRAAPA*SCGHSRSEMSASRRRLSAPNAYDSPP 212
           RRAAP   CG S+   S  +RR  AP    S P
Sbjct: 74  RRAAPRRRCGGSKRRCSGPQRRRGAPRRRCSGP 106


>12_02_0954 - 24757417-24758214
          Length = 265

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = +1

Query: 58  TLERPRPAARAHGAIVLAVGEQRLPEAAG---IPDQK*APVVVGSRH 189
           T +RPRP+  A  A+  A+       A+G      Q+ AP VV S+H
Sbjct: 100 TRKRPRPSRPARAAVAAAIAAAAAASASGSQIAAQQQQAPPVVMSQH 146


>06_01_0464 - 3300356-3300673,3300757-3301244,3301315-3302137
          Length = 542

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 598 AGRITISHRKQL*P-LGLFR*HYRTSLYKKAGWY 500
           AG + +SH   + P L +FR  ++  L+K  GWY
Sbjct: 130 AGFLVLSHHAGVPPSLAVFRHFFKLCLFKSNGWY 163


>10_02_0113 +
           5410413-5410471,5411330-5413309,5413535-5413594,
           5416037-5418047
          Length = 1369

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 20/72 (27%), Positives = 34/72 (47%)
 Frame = -1

Query: 549 YLGDTIEQVCTKKQAGTGPEFLEHCVISIVLARILYH**VGGHIMFISDKVSSMTKLQPN 370
           YLG         K   TG EF+ H  I +V+  I +   +  +++F+  K+ S   ++  
Sbjct: 643 YLGPNCGAQFHAKHLSTGGEFVTHVRILLVVLGIPF---LSSNLVFLMLKLLSSCLIRLR 699

Query: 369 TVIRAALDLLNE 334
           + +  AL L NE
Sbjct: 700 SSLARALQLWNE 711


>07_03_0918 - 22581625-22581687,22581773-22581868,22581980-22582268,
            22582341-22582477,22582567-22582683,22583277-22583440,
            22583542-22583756,22583838-22584004,22584206-22584559,
            22584647-22584795,22584907-22585030,22585132-22585371,
            22585723-22586140,22586297-22586920,22586999-22587183,
            22587302-22587412,22587583-22587789,22587869-22587967,
            22588063-22588159,22588296-22588384,22588495-22588548,
            22588671-22588793,22588872-22588940,22589020-22589089,
            22589202-22589260,22589367-22589570,22590032-22590060,
            22590375-22590433,22590513-22590634,22591637-22591830,
            22591974-22592088
          Length = 1680

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = -1

Query: 483  EHCVISIVLARILYH**VGGHIMFISDKVSSMTKLQPNTVIRAALDLLNEVG 328
            +  V+SI L  +++   VGGH    SD  + +  ++  +     L+LLN VG
Sbjct: 1286 DQTVVSIALGALVHLIEVGGHQFSDSDWETLLKSIRDASYTTQPLELLNSVG 1337


>06_03_1007 + 26869731-26870429,26871262-26871387
          Length = 274

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +1

Query: 4   TSC--TXKAGYAVSLGPSRDTLERPRPAARAHGAIVLAVGEQRLPEAAG 144
           TSC  T  +  A S    R    RPR AAR    +VL    +R+  AAG
Sbjct: 75  TSCVSTADSDVAASAAARRGRRRRPRAAARPRAEVVLEGWGKRMGLAAG 123


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,857,808
Number of Sequences: 37544
Number of extensions: 507625
Number of successful extensions: 1250
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1249
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)