Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_T7_B05
(775 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 32 0.44
11_06_0610 - 25449085-25453284 31 0.77
06_01_0486 - 3455030-3455770 29 3.1
12_02_1174 - 26696869-26698191 29 4.1
12_01_0302 - 2286171-2286341,2286747-2286968 29 4.1
01_01_0070 - 542603-542686,542803-543441 29 4.1
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238... 29 5.4
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 29 5.4
11_01_0342 + 2548147-2548275,2548385-2548425,2548521-2548570,254... 28 9.5
07_03_1523 + 27432991-27433199,27433585-27434185,27434468-274346... 28 9.5
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 28 9.5
02_02_0718 - 13290764-13290897,13292375-13293041,13293364-132937... 28 9.5
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 32.3 bits (70), Expect = 0.44
Identities = 21/72 (29%), Positives = 25/72 (34%)
Frame = -2
Query: 705 PPSPXXXXXXXXXSNPRFHTPTTPDLTSISINPPTPY*KEFAPGLKPPXSSEAPSAYLTP 526
PP+P RF T +TPD ++ P P AP PP P P
Sbjct: 307 PPAPPPARSRRTPPRTRFSTGSTPDTKQVTSPSPRPVQPSNAPPPPPPPPPPPPPP--PP 364
Query: 525 SSLGMAKGVSPP 490
L A PP
Sbjct: 365 PKLNTAPKPPPP 376
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 31.5 bits (68), Expect = 0.77
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = -2
Query: 720 PLXIKPPSPXXXXXXXXXSNPRFHTPTTPDLTSIS-INPPTPY*KEFAPGLKPPXSSE 550
P PP+P P HTP+ P+ T S +PPTP K +P PP + E
Sbjct: 613 PAEKSPPTPESKASSPPPPAPEGHTPSPPESTPPSEKSPPTPESKASSP---PPPTPE 667
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = -2
Query: 720 PLXIKPPSPXXXXXXXXXSNPRFHTPTTPDLT-SISINPPTPY*KEFAPGLKPPXSSE 550
P PP+P P HTP+ P T +PPTP + +P PP + E
Sbjct: 646 PSEKSPPTPESKASSPPPPTPEGHTPSPPKSTPPTEKSPPTPESESSSP---PPPAPE 700
>06_01_0486 - 3455030-3455770
Length = 246
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Frame = -2
Query: 720 PLXIKPPSPXXXXXXXXXSNPRFHTPTTPDLTSISINPPT-PY*KEFAPGLKPPXSSEAP 544
P I PP+P P + P TP + PPT P + P PP + P
Sbjct: 101 PPYIPPPTPPYVPPYIPPPTPPYVPPPTPPSPPPYVPPPTPPSPPPYVPPPSPPATKTCP 160
>12_02_1174 - 26696869-26698191
Length = 440
Score = 29.1 bits (62), Expect = 4.1
Identities = 25/90 (27%), Positives = 28/90 (31%)
Frame = -2
Query: 759 ATPXSFXIIXAVSPLXIKPPSPXXXXXXXXXSNPRFHTPTTPDLTSISINPPTPY*KEFA 580
AT F A+SP+ PP P P P P PP P
Sbjct: 108 ATSPEFKTPPALSPVPPPPPPPRTRTRVEPPHRPPPVKPQPPPSLPPPPPPPPPPPPPRP 167
Query: 579 PGLKPPXSSEAPSAYLTPSSLGMAKGVSPP 490
P +KPP P P SL PP
Sbjct: 168 PSVKPPVVQPKPQ---PPPSLQPPSPPPPP 194
>12_01_0302 - 2286171-2286341,2286747-2286968
Length = 130
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 80 RLQRSRKKHGEDLPTGGRSRRKGEKLE*MQREEQ 181
RL+R RK + D+ G + +GEKLE + +E+
Sbjct: 57 RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90
>01_01_0070 - 542603-542686,542803-543441
Length = 240
Score = 29.1 bits (62), Expect = 4.1
Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 5/88 (5%)
Frame = -2
Query: 738 IIXAVSPLXIKPPSPXXXXXXXXXSNPRFHTPTTPDLTSISINPPTPY*KEFAPGLKPPX 559
+ AV+P+ PP+P P P TP +S P TP P PP
Sbjct: 73 VAPAVAPVTPPPPTPKKAPPPPVTPPPVTPPPVTP--PPVSPPPATPP-PALPPSTPPPV 129
Query: 558 S--SEAPSAY---LTPSSLGMAKGVSPP 490
+ +EAP+A TP + A PP
Sbjct: 130 AAPAEAPAALPPATTPPPVAEAPAELPP 157
>09_04_0737 -
19822822-19822973,19823069-19823135,19823666-19823822,
19824003-19824177,19824364-19824481,19824676-19824874,
19824983-19825062,19825141-19825257,19825791-19825961,
19826121-19826597
Length = 570
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +3
Query: 72 FYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVV 218
F+VD G G + ++++LAV+ G R CR VV DVVV
Sbjct: 93 FHVDPTGDGSSFLQLHRLAVE-GTRRLLAACCRSGVRTVVYTGSADVVV 140
>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = -3
Query: 239 PPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SL 60
P F T+LY ++KD S+ L S+ Y L+DP S D+ + +
Sbjct: 1349 PEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYA-LLDPTWASQDNTSTAIGNIVA 1407
Query: 59 ILHSF 45
+LHSF
Sbjct: 1408 LLHSF 1412
>11_01_0342 +
2548147-2548275,2548385-2548425,2548521-2548570,
2548830-2548974,2549854-2549859,2550122-2550245,
2550422-2550877,2550960-2551013
Length = 334
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/57 (33%), Positives = 23/57 (40%)
Frame = -2
Query: 660 PRFHTPTTPDLTSISINPPTPY*KEFAPGLKPPXSSEAPSAYLTPSSLGMAKGVSPP 490
P F TP P +S S+ PP AP L P +S + Y TP PP
Sbjct: 237 PAFFTP--PSSSSTSMVPPASSMMPTAPPLHPTSASAQRATYGTPLLQPFPPPTPPP 291
>07_03_1523 +
27432991-27433199,27433585-27434185,27434468-27434642,
27434686-27436418,27436871-27437317
Length = 1054
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 660 PRFHTPTTPDLTSISINPPTPY*KEFAPGLKPPXSSE 550
P++ P PDLTS + +PP P+ AP PP + +
Sbjct: 238 PQWPDPYRPDLTSEARDPPPPH---TAPPSPPPATED 271
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Frame = -2
Query: 651 HTPTTPDL--TSISINPPTPY*KEFAPGLKPPXSSEAPSAYLTPSSLGMAKGVSPPY 487
++PT+P TS +P +P +P P PS +PSS SP Y
Sbjct: 1780 YSPTSPAYSPTSPGYSPTSPSYSPSSPSYNPSSVKYTPSHAYSPSSPNYYSSTSPTY 1836
>02_02_0718 -
13290764-13290897,13292375-13293041,13293364-13293719,
13294559-13294629,13295326-13295336
Length = 412
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 440 IPRILRSPPPTHPLIEDVVMATNQAIIDYK 351
+P++L+SPP T+ IED + + ID K
Sbjct: 382 LPQLLQSPPETYHAIEDGHNPSKTSFIDMK 411
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,011,932
Number of Sequences: 37544
Number of extensions: 457809
Number of successful extensions: 1331
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1322
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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