Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_B05
         (775 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical p...    29   4.9  
U88170-4|AAB42245.2|  425|Caenorhabditis elegans Hypothetical pr...    28   8.5  

>U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical
           protein C12D12.1b protein.
          Length = 648

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 20/70 (28%), Positives = 27/70 (38%)
 Frame = -2

Query: 702 PSPXXXXXXXXXSNPRFHTPTTPDLTSISINPPTPY*KEFAPGLKPPXSSEAPSAYLTPS 523
           P+P         +NP   TPTT      S   P          + P  S+ AP+A + P+
Sbjct: 490 PTPVPTTTNTPPANPTTATPTTVGTIGTSPTAPANLTTPTTAPVNPTSSTTAPTAPVNPT 549

Query: 522 SLGMAKGVSP 493
           S   A  V P
Sbjct: 550 SPTTAPTVPP 559


>Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical
           protein T20D3.11 protein.
          Length = 1843

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 719 PXASSHPPLXXRXHQPDHQIPDS 651
           P +S HPPL    H  +H  PD+
Sbjct: 66  PTSSHHPPLNSSSHHSNHNYPDT 88


>U88170-4|AAB42245.2|  425|Caenorhabditis elegans Hypothetical
           protein C10G11.6 protein.
          Length = 425

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 19/62 (30%), Positives = 25/62 (40%)
 Frame = -2

Query: 720 PLXIKPPSPXXXXXXXXXSNPRFHTPTTPDLTSISINPPTPY*KEFAPGLKPPXSSEAPS 541
           P+ I PPS          S  +  T T     S +I  PTP     +P L PP +S+   
Sbjct: 190 PMHIPPPSVYFISTPSIYSTAKSSTSTVTSKLSKAIITPTPPQPLSSPHLLPPRTSDYRK 249

Query: 540 AY 535
            Y
Sbjct: 250 TY 251


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,604,253
Number of Sequences: 27780
Number of extensions: 343176
Number of successful extensions: 1009
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)