Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_B04
         (815 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0645 - 25814302-25814759,25814853-25815005,25815032-258152...    32   0.63 
08_02_1296 - 25951758-25951983,25952134-25952159,25952626-259527...    30   1.9  
01_06_0295 + 28276505-28276576,28276682-28276888,28277492-282777...    30   1.9  
08_02_1508 + 27602104-27602265,27602398-27602449,27603357-276047...    30   2.5  
03_02_0644 + 10118790-10119559,10120252-10120432,10120526-101207...    30   2.5  
07_03_1280 + 25434933-25436153                                         29   4.4  
04_04_0353 - 24623452-24623691,24623871-24624134,24624264-24624449     29   5.8  
12_02_0900 - 24153734-24153943,24154461-24155110,24155198-241553...    28   7.7  
02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921...    28   7.7  

>11_06_0645 -
           25814302-25814759,25814853-25815005,25815032-25815214,
           25815342-25815531,25815624-25815784,25816136-25816623,
           25817035-25817075
          Length = 557

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +1

Query: 241 GVRRGSGRWRTAQGTPPYSAGTSLVATGFGYF 336
           G RRG+GRWR A+G+  Y  GT  ++    YF
Sbjct: 523 GGRRGTGRWRRAEGSGDY--GTDNISNTSTYF 552


>08_02_1296 -
           25951758-25951983,25952134-25952159,25952626-25952710,
           25952828-25952959,25953037-25953180,25953254-25953312,
           25953381-25953687,25954211-25954292,25954369-25954502,
           25954587-25954680,25954751-25954874,25955136-25955195
          Length = 490

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
 Frame = -2

Query: 430 SMGRDDHPNIGASSVQPPKVTMINSQEMQALKNNQTQSQPKKSQRSTEAFPALSAT---A 260
           S   D HP     S+QPP+ T+ N+   Q + + +   Q +K     +  PA++ T   A
Sbjct: 287 SSKEDQHPTT-PPSLQPPETTLDNNTVNQIIPSAKRALQFEKELHIDQPSPAIANTIQVA 345

Query: 259 HSPAAPPQWITVSKGK 212
            +    PQ + +SK K
Sbjct: 346 TNQLYHPQQVDLSKEK 361


>01_06_0295 +
           28276505-28276576,28276682-28276888,28277492-28277740,
           28277928-28278080,28278158-28278313,28278411-28278570,
           28278664-28278815,28278906-28278993,28279111-28279223,
           28279271-28279345,28279435-28279669,28279760-28280148
          Length = 682

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -2

Query: 478 PQQKKPTLDDDDFPSLSMGRDDHP-NIGASSVQPPKVTMINSQEMQALKNNQTQSQPKKS 302
           P   KP L     P  SMG  +   ++G +++QPPK  +++S+ ++A K  +       S
Sbjct: 496 PSPSKP-LSTKKAPRHSMGGANRRLSLGGATMQPPKTDILHSKSVRAAKKTEEIGTLSPS 554

Query: 301 QRSTE 287
            R  +
Sbjct: 555 SRGLD 559


>08_02_1508 + 27602104-27602265,27602398-27602449,27603357-27604757,
            27604833-27606140,27606594-27607435
          Length = 1254

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
 Frame = -2

Query: 553  QLHSQPASASNFRLTQTSGNRISIPPQQKKPTLDDDDFPSLSMGRDDHPNIGASSVQPPK 374
            Q+ SQ    S+F  T+   N IS   Q    T+  D  P   + +D  P +   SV   +
Sbjct: 976  QMPSQAPLPSSFS-TRNKENGISEAGQTN--TVAPDGLPGPGVPKDAGPQVAGPSVVKSQ 1032

Query: 373  VTMINSQE----MQALKNNQTQSQPKKSQRSTEAFPAL 272
              M  +       Q L N+Q +SQP++++    A  AL
Sbjct: 1033 KNMNEAYNDGPSTQQLPNDQYRSQPREAKEEQGADAAL 1070


>03_02_0644 +
           10118790-10119559,10120252-10120432,10120526-10120725,
           10120834-10120992,10122375-10122741
          Length = 558

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 329 PNPVATKEVPAEYGGVPCAVRHRPLPRRTPAVD 231
           PN + T E    YGG+ CA+   P+  RT ++D
Sbjct: 433 PNHI-TPEAWGNYGGIKCAMETLPITNRTTSLD 464


>07_03_1280 + 25434933-25436153
          Length = 406

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 228 VIHCGGAAGEWAVADSAGNASVLRWDFFGCDW 323
           V+ CGG A    +++  G AS+  W+F G  W
Sbjct: 293 VVACGGRAYVVVLSELLGTASLRLWEFAGGAW 324


>04_04_0353 - 24623452-24623691,24623871-24624134,24624264-24624449
          Length = 229

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -2

Query: 553 QLHSQPASASNFRLTQTSGNRISIPPQQKKPTLDDDDF 440
           +L + P  ASN  L + SG R S  P+ + P  DD+DF
Sbjct: 186 ELFASPQPASNMGLYKASGARQSKKPRVEIPD-DDEDF 222


>12_02_0900 -
           24153734-24153943,24154461-24155110,24155198-24155334,
           24156595-24157223
          Length = 541

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 274 AQGTPPYSAGTSLVATGFGYFLTLAFLD 357
           A G PP+S     + TG G+ +++AFLD
Sbjct: 76  ASGIPPFSWRKLWLFTGPGFLMSIAFLD 103


>02_02_0346 -
           9214365-9214583,9214830-9214919,9215012-9215177,
           9215601-9215911,9215944-9216566,9216779-9216968,
           9217096-9217197,9217285-9217425,9217815-9218411,
           9219126-9219286,9220709-9220824,9221538-9221654,
           9221746-9221808,9221879-9221949
          Length = 988

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
 Frame = -2

Query: 487 SIPPQQKKPTLDDDDFPSLSMGRDDHP----NIGASSVQPPKVTMINSQEMQALKNN--- 329
           ++P  +K+P  + + +P L+   D H     N+G  S Q         ++ + LK+    
Sbjct: 673 NVPESEKQPVQNAEKYPFLTTTIDSHEVPNFNLGFDSSQEVVQHQRGKKQQEHLKDYGSF 732

Query: 328 QTQSQPKKSQRSTEAFPALSATAHSPAA 245
            T+   K  + + EA  + SAT  SP A
Sbjct: 733 TTEDYEKVGREADEAIASKSAT-KSPVA 759


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,557,570
Number of Sequences: 37544
Number of extensions: 359865
Number of successful extensions: 1233
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1233
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)