Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_B02
         (843 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    76   7e-15
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    29   1.1  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    28   1.9  
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    27   4.4  
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    27   4.4  
SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po...    26   7.7  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    26   7.7  

>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 75.8 bits (178), Expect = 7e-15
 Identities = 29/70 (41%), Positives = 44/70 (62%)
 Frame = -3

Query: 529 HYACPTCQTSMIDMSNLWNYLDSEVAATPMPSEYADYKATILCKDCHKLSTVKFHVVGLK 350
           +Y CPTC  ++I++++L+  LD E+   PMP  Y  + +TI C DC+     K+H +G K
Sbjct: 306 NYRCPTCYKTIINVNSLFRILDMEIERQPMPYPYNTWISTIRCNDCNSRCDTKYHFLGHK 365

Query: 349 CQHCGAYNTC 320
           C  C +YNTC
Sbjct: 366 CNSCHSYNTC 375


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 520 CPTCQTSMIDMSNLWNYLDSEVAATPMPSEY 428
           C  C  +   M  LW++LDSE    P+ + Y
Sbjct: 106 CEACVENKTLMVKLWSFLDSEGPLNPLQASY 136


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -1

Query: 726 CSAAKGFGNRVRRETCPXSELFPC 655
           CSA  G GN +  ETCP S  F C
Sbjct: 266 CSACHGPGNFLCCETCPNSFHFTC 289


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +1

Query: 328 CRLRNVDISVLRRETSPLTA 387
           C LRN D+   +R TSPLTA
Sbjct: 613 CGLRNDDLQGNQRRTSPLTA 632


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
           Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 383 VNGEVSRRRTEMSTLRSLQHVSDERV 306
           +N E+S +R E+ +L  LQH    R+
Sbjct: 878 INSEISDKRNELESLEELQHEVATRI 903


>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 434

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 6   FFFFYGNRLAPGGSRTHMFTIAHEY 80
           +FF+ G+ +AP     H F  A +Y
Sbjct: 342 YFFYNGDAIAPSADDQHAFEKARDY 366


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 606 PGCWHGNAGRXGXPPSHTGTVPNXD 680
           PG  H +  + G PP +T   PN D
Sbjct: 11  PGRHHWSNSKDGMPPEYTNQDPNSD 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,699,937
Number of Sequences: 5004
Number of extensions: 45665
Number of successful extensions: 139
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)