Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_T7_B02
(843 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0252 - 16191136-16191279,16191639-16191750,16191833-161919... 90 2e-18
01_06_0515 - 29959149-29959253,29959510-29959633,29959702-299597... 68 8e-12
03_02_0994 - 13067254-13067379,13067483-13067521,13067824-130678... 58 7e-09
12_02_0648 + 21490202-21490296,21490547-21490634,21491216-214912... 40 0.002
05_07_0028 + 27153663-27153932,27154966-27155175,27156220-271564... 40 0.003
01_06_0319 - 28441082-28441102,28441630-28441701,28442568-284426... 39 0.006
03_01_0325 + 2529875-2529922,2530181-2530279,2530958-2531055,253... 31 1.1
08_02_0022 + 11320299-11320637 28 8.1
>10_08_0252 -
16191136-16191279,16191639-16191750,16191833-16191924,
16192564-16192641,16192764-16192796,16193712-16193771,
16193912-16193999,16194155-16194180
Length = 210
Score = 90.2 bits (214), Expect = 2e-18
Identities = 39/74 (52%), Positives = 44/74 (59%)
Frame = -3
Query: 529 HYACPTCQTSMIDMSNLWNYLDSEVAATPMPSEYADYKATILCKDCHKLSTVKFHVVGLK 350
H+ACP C S DMS+ W LD EVAATPMP Y ILC DC S V FHV+ K
Sbjct: 126 HFACPVCSRSACDMSDAWKKLDEEVAATPMPEFYQKKMIWILCNDCGATSNVNFHVLAQK 185
Query: 349 CQHCGAYNTCQTNG 308
C C +YNT +T G
Sbjct: 186 CPGCSSYNTRETRG 199
>01_06_0515 -
29959149-29959253,29959510-29959633,29959702-29959793,
29959921-29960003,29960573-29960654,29960707-29960784,
29960875-29960967,29961647-29961734,29961822-29961991
Length = 304
Score = 68.1 bits (159), Expect = 8e-12
Identities = 33/71 (46%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Frame = -3
Query: 526 YACPTCQTSMIDMSNLWNYLDSEVAATPMPSEYADYKAT-ILCKDCHKLSTVKFHVVGLK 350
+ACP C S+ DMS W LD E+A S+ D K ILC DC S V+FH++ K
Sbjct: 236 FACPLCSKSVCDMSKAWERLDEELATI---SDTCDNKMVRILCNDCGATSEVQFHLIAHK 292
Query: 349 CQHCGAYNTCQ 317
CQ C +YNT Q
Sbjct: 293 CQKCKSYNTRQ 303
>03_02_0994 -
13067254-13067379,13067483-13067521,13067824-13067893,
13068025-13068116,13068237-13068319,13068590-13068633,
13068682-13068800,13068883-13068915,13069152-13069239,
13069364-13069413
Length = 247
Score = 58.4 bits (135), Expect = 7e-09
Identities = 25/70 (35%), Positives = 37/70 (52%)
Frame = -3
Query: 526 YACPTCQTSMIDMSNLWNYLDSEVAATPMPSEYADYKATILCKDCHKLSTVKFHVVGLKC 347
++CP C + DM LD+E+ A + +Y K I+C DC + V V G KC
Sbjct: 171 FSCPICSMPIFDMDKFLRALDAEIEANMLHIDYMG-KGWIVCNDCRDTTQVYARVAGHKC 229
Query: 346 QHCGAYNTCQ 317
HC ++NTC+
Sbjct: 230 CHCQSHNTCR 239
>12_02_0648 +
21490202-21490296,21490547-21490634,21491216-21491260,
21491355-21491387,21491480-21491557,21491647-21491690,
21491765-21491805,21492102-21492184,21492261-21492352,
21492468-21492537,21492838-21492876,21493670-21493687,
21494586-21494713,21495235-21495358,21495585-21495716,
21496092-21496223,21496582-21496665
Length = 441
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -3
Query: 526 YACPTCQTSMIDMSNLWNYLDSEVAATPMPSEY 428
Y CP C + +DM++ W LD E+ AT MP Y
Sbjct: 201 YTCPICSKTALDMTHHWALLDQEIEATIMPPVY 233
>05_07_0028 + 27153663-27153932,27154966-27155175,27156220-27156414,
27156491-27156840,27157198-27157423,27157524-27157692,
27158145-27158990,27159647-27159818,27159934-27160052,
27160117-27160155,27161033-27161157,27161250-27161309,
27161471-27161542,27161980-27162114
Length = 995
Score = 39.5 bits (88), Expect = 0.003
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -3
Query: 529 HYACPTCQTSMIDMSNLWNYLDSEVAATPMPSEYAD 422
HY CP C S+ DM+ + LD +AA +P EY D
Sbjct: 913 HYTCPICSKSLGDMTVYFGMLDGLLAAEELPEEYRD 948
>01_06_0319 - 28441082-28441102,28441630-28441701,28442568-28442627,
28442918-28443105,28444300-28444327,28444880-28444907,
28444942-28445163,28445238-28445409,28446224-28447468,
28447573-28447741,28447820-28448045,28449096-28449451,
28449530-28449724,28450655-28450864,28451729-28452004
Length = 1155
Score = 38.7 bits (86), Expect = 0.006
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = -3
Query: 529 HYACPTCQTSMIDMSNLWNYLDSEVAATPMPSEYAD 422
HY CP C S+ DM+ + LD+ +AA +P EY D
Sbjct: 1111 HYTCPICCKSLGDMAVYFGMLDALLAAEELPEEYRD 1146
>03_01_0325 +
2529875-2529922,2530181-2530279,2530958-2531055,
2531945-2532031,2532652-2532684,2532813-2532890,
2533059-2533183,2533267-2533349,2533436-2533527,
2533611-2533680,2533760-2533829,2533919-2534073
Length = 345
Score = 31.1 bits (67), Expect = 1.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 526 YACPTCQTSMIDMSNLWNYLDSE 458
++CP C S DMS+ W LD E
Sbjct: 249 FSCPVCLRSACDMSHAWQKLDQE 271
>08_02_0022 + 11320299-11320637
Length = 112
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 81 KNADEHRLGAACGLGRIVLAVARAGQAWGGSSSG 182
+ AD H G A +G ++ AVAR G GG G
Sbjct: 20 RGADVHVAGGAGIVGNMMPAVARGGGGGGGGGGG 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,484,389
Number of Sequences: 37544
Number of extensions: 373884
Number of successful extensions: 1134
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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