Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_A06
         (874 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   0.85 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.91 
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    23   4.9  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    23   4.9  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect(2) = 0.85
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 437 APPPPPP 417
           APPPPPP
Sbjct: 342 APPPPPP 348



 Score = 22.2 bits (45), Expect = 6.4
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 630 PXXXAPPXPPPCS 668
           P   APP PPP S
Sbjct: 338 PPKPAPPPPPPSS 350



 Score = 22.2 bits (45), Expect = 6.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 497 PPPPPPXXXG 468
           PPPPPP   G
Sbjct: 343 PPPPPPSSSG 352



 Score = 20.6 bits (41), Expect(2) = 0.85
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -3

Query: 500 PPPPPPP 480
           P PPPPP
Sbjct: 341 PAPPPPP 347


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.0 bits (52), Expect = 0.91
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 500  PPPPPPPXXXG 468
            PPPPPPP   G
Sbjct: 1355 PPPPPPPPSSG 1365



 Score = 23.8 bits (49), Expect = 2.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 436  PPPPPPP 416
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 436  PPPPPPP 416
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 436  PPPPPPPXG 410
            PPPPPP  G
Sbjct: 1357 PPPPPPSSG 1365


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 189 GXXGGFXXPGGXGGXXVSPXN 251
           G  GGF   GG GG    P N
Sbjct: 20  GGFGGFGGFGGLGGRGKCPSN 40


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 189 GXXGGFXXPGGXGGXXVSPXN 251
           G  GGF   GG GG    P N
Sbjct: 20  GGFGGFGGFGGLGGRGKCPSN 40


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,507
Number of Sequences: 438
Number of extensions: 7911
Number of successful extensions: 50
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)