Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_P22
(812 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 78 1e-15
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 38 0.002
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 31 0.26
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 30 0.34
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ... 29 0.79
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 29 0.79
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 28 1.4
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom... 28 1.8
SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 28 1.8
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po... 27 2.4
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 27 2.4
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ... 27 2.4
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 5.5
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 5.5
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 26 7.3
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 26 7.3
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 26 7.3
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 25 9.7
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 25 9.7
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 25 9.7
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy... 25 9.7
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 25 9.7
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 78.2 bits (184), Expect = 1e-15
Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 3/163 (1%)
Frame = +3
Query: 159 EAQANENTCVVCFKNVLYYSIGECDHPVCFECSTRMRVLCLQNECPICRKDLLRVVFT-D 335
E +E C +C + + Y + C+H +C C+ R+R L EC C+ + V+ T D
Sbjct: 73 EQDEDEQICFICAEGITYSCVLPCNHRMCHVCALRLRALYKTKECTFCKTEWDTVLITKD 132
Query: 336 SIHPYKELGNREYPDRLFERQYKIVFCSEDIKNAYENLLENRCK--ICDKIPPFRNFSLL 509
++ + P + + + IV+ E + LL+ C CD + + L
Sbjct: 133 HEIDIHDVDLAKLPFQ--DEKLGIVYSDEHAQEESNLLLQFNCPEDACDIT--CKGWFDL 188
Query: 510 NDHMKRVHEGFFCDLCVNHLKIFTNERRCYTRQELAHHRRKGD 638
H K H FFCDLCV + K+FT+E ++++ L H GD
Sbjct: 189 KLHAKVKHHKFFCDLCVKNKKVFTHEHTLFSKKGLTKHNEVGD 231
Score = 49.6 bits (113), Expect = 5e-07
Identities = 18/38 (47%), Positives = 25/38 (65%)
Frame = +1
Query: 640 LNDTSHRGHPLCEFCXKRFMDPDELYRHLRKEHLYCHL 753
L T +GHP CEFC F D DEL++H R++H C++
Sbjct: 236 LEITGFKGHPKCEFCNTHFYDDDELFKHCREKHERCYI 273
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 37.5 bits (83), Expect = 0.002
Identities = 27/99 (27%), Positives = 38/99 (38%), Gaps = 2/99 (2%)
Frame = +3
Query: 108 YRNAFTES*INNTTIMSEAQANENTCVVCFKNVLYYSIGECDHPVCFECSTRMRVLCLQN 287
Y A E ++ ++ E + E C +CF + + C H C C M+ L
Sbjct: 145 YETAVAEF-LHMEDLLQENVSRELECQICFGMLYDPVVSPCGHTFCGPC--LMQALTQSP 201
Query: 288 ECPICRKDLLRVVFTD--SIHPYKELGNREYPDRLFERQ 398
+CP CR L V + H YPD ERQ
Sbjct: 202 QCPTCRFGLPSPVVLEHAKSHSITTFLRDFYPDNWLERQ 240
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 30.7 bits (66), Expect = 0.26
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +3
Query: 159 EAQANENTCVVCF-KNVLYYSIGECDHPVCFEC 254
E +E TC +C+ + L + ECDH C C
Sbjct: 123 EVVHHEGTCEICYDEGCLPFFSAECDHEFCLAC 155
>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 793
Score = 30.3 bits (65), Expect = 0.34
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = -1
Query: 227 LAN*VVQNVLETNYASILVRLSLRHDCCI 141
LA VVQNVL N +S+LV+ + R+ CI
Sbjct: 312 LAEPVVQNVLWVNTSSVLVQFTNRNSTCI 340
>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 868
Score = 29.1 bits (62), Expect = 0.79
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 9/117 (7%)
Frame = +3
Query: 117 AFTES*INNTTIMSEAQANENTCVVCFKN---VLYYSIGEC-DHPVCFECSTRMRVLCLQ 284
A+ E IN + A+ E V N +L+ S+GE D + F CS+ +R+L +
Sbjct: 334 AYHEEEINPDNTIYRAKWEEYFGGVILHNAFFILHVSLGEVPDFHLLFHCSSDVRILQVV 393
Query: 285 NECPICRKDLL-----RVVFTDSIHPYKELGNREYPDRLFERQYKIVFCSEDIKNAY 440
NE + + V++ D HP K L ++ +R + KI + +N Y
Sbjct: 394 NESMPIKSEFFILTTESVLWMDIQHPQKPLLEWKH-NRKLDPTLKITVTATFSQNIY 449
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 29.1 bits (62), Expect = 0.79
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +3
Query: 150 IMSEAQANENTCVVCFKNVLYYSIGECDHPVCFEC-STRMRVLCLQNECPICRK 308
+ S + + CV+C + S C H C C + + +CP+CR+
Sbjct: 195 VPSSQRLADYKCVICLDSPENLSCTPCGHIFCNFCILSALGTTAATQKCPVCRR 248
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +3
Query: 183 CVVCFKNVLYYSIGECDHPVCFECSTRMRVLCLQNECPICRKDL 314
C +C + + C H C+EC + L CP CR+ L
Sbjct: 85 CPICTEALQRPFTTHCGHTYCYEC--LLNWLKESKSCPTCRQKL 126
>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 554
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Frame = +3
Query: 144 TTIMSEAQANENTCVVCFKNVLYYSIGE-----CDHPVCFECSTRMR 269
TT ++ AN C +CF LYY C P+C EC +R
Sbjct: 138 TTAITTIYANAMECPICF---LYYPSNFNYTRCCAQPICSECFVEIR 181
>SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 124
Score = 27.9 bits (59), Expect = 1.8
Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 2/79 (2%)
Frame = +3
Query: 72 ASTYSEFNKTLGYRNAFTES*INNTTIMSEA--QANENTCVVCFKNVLYYSIGECDHPVC 245
A+ F++ G+R NN + ++TC +C + +C+ VC
Sbjct: 45 AAVKEAFSENRGFRTCHVCHRKNNMRLKVGTCESCKKHTCAICIRQC-----HKCESNVC 99
Query: 246 FECSTRMRVLCLQNECPIC 302
CS + R + CP C
Sbjct: 100 SMCSKQERTFESEAFCPSC 118
>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 635
Score = 27.5 bits (58), Expect = 2.4
Identities = 17/71 (23%), Positives = 33/71 (46%)
Frame = -1
Query: 653 EVSFKVTFTSMMCQFLSCITPSFIGKNLQMIDTKVTKKPFMNPFHVIIQQTKVAERWYLI 474
+V F +F+ Q + + PSF+ L I K+ KP +P + T+ + + +
Sbjct: 558 QVGFDDSFSGDDKQVVDVVAPSFVIPRLDDILNKIADKPLYSPDDWELYFTR-PDGKHSM 616
Query: 473 TDFTPILQQVF 441
TD P+ ++
Sbjct: 617 TDLLPLYADLY 627
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 27.5 bits (58), Expect = 2.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 673 CEFCXKRFMDPDELYRHLRKEHL 741
C FC + F D L RH+++ HL
Sbjct: 58 CSFCNRAFARSDVLNRHVQQMHL 80
>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 496
Score = 27.5 bits (58), Expect = 2.4
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +1
Query: 352 KSLGTGN--TLIDCLKDNTKLYSVLKT*KMHMKTCWRIGV 465
+ +GTG ++ C DN K+Y+V K H +C GV
Sbjct: 14 REIGTGAFASVRLCYDDNAKIYAVKFVNKKHATSCMNAGV 53
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 26.2 bits (55), Expect = 5.5
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Frame = +3
Query: 174 ENTCVVCFKNVLYYS----IGECDHPVCFECSTRMRVLCLQNECPICR 305
+ C+VC N + +C+H EC + + QN CP+CR
Sbjct: 522 DERCLVCLSNFELNDECRRLKQCNHFFHRECIDQW-LTSSQNSCPLCR 568
>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 26.2 bits (55), Expect = 5.5
Identities = 9/27 (33%), Positives = 12/27 (44%)
Frame = +3
Query: 225 ECDHPVCFECSTRMRVLCLQNECPICR 305
+C H C+ C L CPIC+
Sbjct: 212 DCGHTYCYACIMSRLKLVNNVSCPICK 238
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.8 bits (54), Expect = 7.3
Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Frame = +1
Query: 652 SHRGH-PL-CEF--CXKRFMDPDELYRHLRKEHLYCHLV 756
SH G P C + C KRF DEL RH+R HL LV
Sbjct: 25 SHTGEKPFECSYPSCKKRFTRRDELIRHVR-THLRKALV 62
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.8 bits (54), Expect = 7.3
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +3
Query: 333 DSIHPYKELGNREYPDRLFERQYKIVF---CSEDIKNAYENLLENRCKICDKI 482
+++ YK Y DRLF++ VF +KNA +++LE+ K D I
Sbjct: 193 ENLDEYKSQAKSYYFDRLFDQNINKVFDVVPVTQVKNAPDDVLEDLFKNYDFI 245
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 25.8 bits (54), Expect = 7.3
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = +1
Query: 649 TSHRGHPLCEF--CXKRFMDPDELYRHLR 729
T + H +C F C KRF DEL RH R
Sbjct: 49 TGEKPH-VCTFPGCAKRFSRSDELTRHAR 76
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 25.4 bits (53), Expect = 9.7
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -2
Query: 514 SFSKLKLRNGGILSQILHRFSNKFSYAFFMSSE 416
SFSK L I+S +HRF++KF F+S E
Sbjct: 1545 SFSKTLLGFVAIIS--IHRFAHKFFIICFLSRE 1575
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Frame = -2
Query: 490 NGGILSQILHRFSN------KFSYAFFMSSEQN 410
NGGI+ Q+L SN KF+ FF++ + N
Sbjct: 91 NGGIVIQVLGEMSNKGKLSRKFAQTFFLAEQPN 123
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 25.4 bits (53), Expect = 9.7
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = +3
Query: 285 NECPICRKDLLRVVFTDSIHPYKELGNREYPDRLFERQYKIVFCSEDIKNAYENLLENRC 464
N CP+CR + L+V D + K R YP + E+ + E ++ E RC
Sbjct: 73 NTCPLCRTEFLKV---DVLEFVKGPWYRAYP--VEEKTQSVANAGEPFED--EGSETCRC 125
Query: 465 KICDK 479
IC +
Sbjct: 126 VICGR 130
>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 327
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 311 IFTTYRTLILKTEHPHPSRALETYGM 234
+F YR L+ PH +RAL+ +G+
Sbjct: 57 LFPKYREKYLREVWPHVTRALDKFGI 82
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 25.4 bits (53), Expect = 9.7
Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Frame = +3
Query: 390 ERQYKIVFCSEDIKNAYE-NLLENRCKICDKIPPFRN---FSLLNDHMKRVHEGFFCDLC 557
ER++KI+ + + ++C +C +N + N+H K HE F +
Sbjct: 496 ERKWKIILAHRMANWVMDYHQASDKCTVCTPASLSKNKKPYMQENEHQKDSHEETFNEQI 555
Query: 558 VNHLKIFTN 584
V+H + N
Sbjct: 556 VSHFNLNDN 564
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,424,007
Number of Sequences: 5004
Number of extensions: 73949
Number of successful extensions: 254
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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