Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_P22
         (812 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    25   1.1  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   3.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.4  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    22   5.9  

>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 670 LCEFCXKRFMDPDELYRHLRKEH 738
           +CEFC +R+   + L  H   +H
Sbjct: 37  VCEFCNRRYRTKNSLTTHKSLQH 59


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +1

Query: 673 CEFCXKRFMDPDELYRHLR 729
           C  C K F  P  L RH R
Sbjct: 94  CNICGKTFAVPARLTRHYR 112



 Score = 22.2 bits (45), Expect = 5.9
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = +1

Query: 622 IDVKVTLNDTSHRGHP--LCEFCXKRFMDPDELYRHLR 729
           +  ++T +  +H G     CE+C K F   + L  H R
Sbjct: 103 VPARLTRHYRTHTGEKPYQCEYCSKSFSVKENLSVHRR 140



 Score = 22.2 bits (45), Expect = 5.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 649 TSHRGHPLCEFCXKRFMDPDELYRHLR 729
           T  R H  C  C K F+   +L  H+R
Sbjct: 171 TGERPHK-CTVCSKTFIQSGQLVIHMR 196


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 682 RIHKVDGPCVRYHSR 638
           R+H    PCVRY+ R
Sbjct: 712 RLHYETDPCVRYYPR 726


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +1

Query: 673 CEFCXKRFMDPDELYRHLRKEHLYC 747
           C++C K ++    L  H+R   L C
Sbjct: 19  CKYCEKVYVSLGALKMHIRTHTLPC 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,305
Number of Sequences: 438
Number of extensions: 4929
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)