Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_P21
         (813 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    27   2.4  
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    26   7.3  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    26   7.3  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    26   7.3  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   9.7  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    25   9.7  

>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 25/115 (21%), Positives = 47/115 (40%)
 Frame = +2

Query: 410 AGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRS 589
           A  A+  +A     A +AEA   E+ K+++  EP+++  +K+       +      R   
Sbjct: 89  AAEAEAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKKIAIIDSTNFRDSRVRVNG 148

Query: 590 PFGSRRSMLSVFFLTRASRLRRSGYNSXRCRGSE*SVXDFRSWRGVVLGKXASCC 754
                R+   + F+     + R G    +C  S   V D  S+  + LG  ++ C
Sbjct: 149 WVHRMRTQKGIIFI-----ILRDGTGFLQCVLSG-KVYDRASYDFINLGPESTVC 197


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 20/77 (25%), Positives = 30/77 (38%)
 Frame = -1

Query: 798 TKTESPGAGXSXNRSQHDAXLPSTTPRQERKSXTDYSEPRHRXELYPDLRSRDARVKKKT 619
           T T    +  S      D  +PS  P    +S +  S  RH  +   +L S     +   
Sbjct: 102 TSTSGCASAHSVGYQNIDNLIPSPLPESASRSSSQSSHQRHSRDGRGELGSEHGERRSAM 161

Query: 618 DSIDLRDPNGLRRRVSR 568
           D   LRD +  + RVS+
Sbjct: 162 DG--LRDRHIRKVRVSQ 176


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 26/112 (23%), Positives = 42/112 (37%)
 Frame = +2

Query: 344 SNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESG 523
           S+T+   R     H    L  ++    L S G    +S   +++   GK+   V P  + 
Sbjct: 271 SSTSAKRRRPDHNH-TSTLDASSSNTSLASTGPMTVSS---STVERKGKEASEVNPNSTS 326

Query: 524 GSKQCDFTSRVSHSKRETRRRSPFGSRRSMLSVFFLTRASRLRRSGYNSXRC 679
                DF + +S S+    ++S  G  R            R R +G NS  C
Sbjct: 327 SVTFSDFAAAISRSRCSRCKKSKKGCDRQ-------RPCGRCRDAGLNSEDC 371


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
 Frame = -1

Query: 786 SPGAGXSXNRSQHDAXLPSTTPRQERKSXTDYSEPRHRXELYPDLR-SRDARVKKKTDSI 610
           S  +  S   SQH   L    P  E+KS  D S PR +   +      R  R  K  D+ 
Sbjct: 134 SSSSSSSSQSSQHSTHLQFQIPSNEKKSLDDPS-PRRKPSFFSKSNLKRKYRYLKNPDAW 192

Query: 609 DL 604
           +L
Sbjct: 193 NL 194


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 77   SPYAY*TSGSSQLLPFCSTRGF 12
            SPYA+ T  S+ L PF STR +
Sbjct: 1211 SPYAFSTVYSNCLNPFISTRSY 1232


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +2

Query: 338 CDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA--SKAEASLAESG 487
           CD+       + S G L H + R  GG  +  + +  N+  SK E  +A SG
Sbjct: 601 CDACLNLGTHSESIGDLEHQIRRYTGGISISPSAVTNNSDVSKYELGIAISG 652


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,286,525
Number of Sequences: 5004
Number of extensions: 65822
Number of successful extensions: 146
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)