Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_P18
(797 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1747 + 29188568-29188715,29188793-29189541 31 0.80
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 31 1.1
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 30 1.9
06_03_0619 + 22801576-22802016,22802111-22802596 30 2.5
09_04_0430 + 17502387-17503505 28 7.5
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305... 28 7.5
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707... 28 7.5
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 7.5
08_02_0813 + 21459776-21461128 28 9.9
01_06_1147 + 34892415-34893702,34894051-34894676 28 9.9
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 31.5 bits (68), Expect = 0.80
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +3
Query: 396 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARSSSVXG 548
PPP TT++ V L TA + S + QF+C+ TTC + S S+ G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -2
Query: 343 HQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQM-*GRVDYDFGVGG 179
H P AAA P VP++ P L + GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 241 VRVHRADTGRSSNELDRQTTELERRGMGLQHLAGVLGTL 357
V+ H + R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>06_03_0619 + 22801576-22802016,22802111-22802596
Length = 308
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 581 DKRIXSMFESGXWECDRILSXAXQTQGRGEVEPPVXXVQ 697
D I S+ ESG E + L A Q QGRG+V + +Q
Sbjct: 175 DSTIDSLIESG--ESESFLQKAIQEQGRGQVMDTISEIQ 211
>09_04_0430 + 17502387-17503505
Length = 372
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +1
Query: 130 TVPHDRLAPRNVRSGVSPRLQNRSQPDPTFETC*HS*VRVHRAD 261
+ P R+AP+ + +P ++ + P PTF T S +H+ D
Sbjct: 201 STPPQRVAPQPPATAAAPPIEPVAPPSPTFWTVCMSCCHIHQYD 244
>08_02_1291 +
25930056-25930067,25930289-25930334,25930434-25930546,
25930645-25930930,25931357-25931421,25931642-25931693,
25931774-25931883,25932611-25932641,25932853-25933004,
25934622-25934840
Length = 361
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 256 HGGLGLTNVSMSQM*GRVDYDFGVGGRLPI 167
+GG L ++Q G Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129
>07_03_0809 -
21669632-21669637,21669871-21670131,21670573-21670752,
21671458-21672819
Length = 602
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 128 SLSLMIDSLLATYDRESPPDSKIVVNPTLHLRHANIRESESTVRILADLQMN 283
+L +D L+ YD+ PPDS+ V HA + +R+L + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 425 GRGERSPRRWLQPRLAVPRQASTSVPRTP 339
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>08_02_0813 + 21459776-21461128
Length = 450
Score = 27.9 bits (59), Expect = 9.9
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +2
Query: 314 GEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPISMQ 493
G++ C WL + R P LL+ TT R V+ W K+ IS P+S++
Sbjct: 238 GDYRCPAWLSTDARRLIPR--LLDPNPTT------RISVAQLVETPWFKKTSISRPVSIE 289
Query: 494 L 496
L
Sbjct: 290 L 290
>01_06_1147 + 34892415-34893702,34894051-34894676
Length = 637
Score = 27.9 bits (59), Expect = 9.9
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +3
Query: 345 PRNACGGLTWYC*TRLQPPPGTTLSAPVYLITAPSPG 455
P N+ G + C LQP PGT S P T+PSPG
Sbjct: 210 PANSFLGNAFLCGFPLQPCPGTAPS-PSPSPTSPSPG 245
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,328,494
Number of Sequences: 37544
Number of extensions: 511222
Number of successful extensions: 1339
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1337
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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