Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_P14
(805 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 313 9e-86
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 310 7e-85
01_06_0083 + 26283492-26283756,26284255-26284467,26284620-262847... 31 1.1
05_04_0324 - 20273797-20274261 29 4.3
02_04_0595 - 24186714-24186898,24187004-24187150,24187647-241877... 29 5.7
01_01_1208 + 9733010-9733114,9733920-9733979,9735254-9736280,973... 29 5.7
01_05_0125 - 18382402-18382761,18382863-18383036 28 7.6
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 313 bits (769), Expect = 9e-86
Identities = 143/244 (58%), Positives = 182/244 (74%), Gaps = 1/244 (0%)
Frame = +1
Query: 43 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 222
F+HP HGS+GF P+KRS RHRGKVK+FPKDD SKP HLT+F+GYKAGMTH+VRE ++PGS
Sbjct: 6 FEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREVEKPGS 65
Query: 223 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 402
K++KKE EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYKNW
Sbjct: 66 KLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKS 125
Query: 403 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAHIMEIQ 579
+ + G+K I+ +KM +Y S+VRVIAHTQ++ +K +QKKAH+MEIQ
Sbjct: 126 KKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIRKMKGLKQKKAHLMEIQ 185
Query: 580 LNGGTIEDKVKWAREHLEKPXPGRFCVGQXEMIDCIGVTKGKGYKGVPSRWHTXXLPR*K 759
+NGGTI DKV + + EK P + EMID IGVTKGKGY+GV +RW LPR
Sbjct: 186 INGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKT 245
Query: 760 HKGL 771
H+GL
Sbjct: 246 HRGL 249
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 310 bits (762), Expect = 7e-85
Identities = 142/244 (58%), Positives = 181/244 (74%), Gaps = 1/244 (0%)
Frame = +1
Query: 43 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 222
F+HP HGS+GF P+KRS RHRGKVK+FPKDD +KP HLT+F+GYKAGMTH+VRE ++PGS
Sbjct: 6 FEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREVEKPGS 65
Query: 223 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 402
K++KKE EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYKNW
Sbjct: 66 KLHKKETCEAVTIIETPPIVVVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKS 125
Query: 403 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAHIMEIQ 579
+ + G+K I+ +KM +Y SVVRVI HTQ++ +K +QKKAH+MEIQ
Sbjct: 126 KKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASVVRVIVHTQIRKMKGLKQKKAHLMEIQ 185
Query: 580 LNGGTIEDKVKWAREHLEKPXPGRFCVGQXEMIDCIGVTKGKGYKGVPSRWHTXXLPR*K 759
+NGGTI DKV + + EK P + EMID IGVTKGKGY+GV +RW LPR
Sbjct: 186 INGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKT 245
Query: 760 HKGL 771
H+GL
Sbjct: 246 HRGL 249
>01_06_0083 +
26283492-26283756,26284255-26284467,26284620-26284771,
26284884-26285157,26285277-26285485
Length = 370
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 462 NRKRFQEDDPLL*CCKSHCPHSNEAVKTATKEGSHYGNP 578
N +RF +DPLL CC H P+ A T + + +G+P
Sbjct: 297 NPRRFGINDPLLACCGGHGPYHTGA--TCDRTATVWGDP 333
>05_04_0324 - 20273797-20274261
Length = 154
Score = 29.1 bits (62), Expect = 4.3
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +1
Query: 121 FPKDDPSKPVHLTAFIGYKAGMTHVVRE--PDRPGSKINKKEIVEAVTIIETPPMVCVGV 294
FP D+P K VH+ G + +T ++ E P + +N EA + P CVGV
Sbjct: 60 FPPDNPQKFVHVHRVFG-ASNVTKLLNELHPYQREDAVNSL-AYEADMRLRDPVYGCVGV 117
Query: 295 VGYIETPHGLRAL 333
+ ++ H LR L
Sbjct: 118 ISVLQ--HQLRQL 128
>02_04_0595 -
24186714-24186898,24187004-24187150,24187647-24187718,
24188061-24188204,24188769-24188840,24189233-24189304,
24189805-24189876,24190214-24190285,24190416-24190487,
24190685-24190756,24190957-24191031,24191226-24191372,
24191670-24191877,24192240-24192368,24192454-24192663
Length = 582
Score = 28.7 bits (61), Expect = 5.7
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = +2
Query: 623 NIWRNLXLVDSVLAXMK*LTALVSPRAKDTKVSLLVGTQXXYPXKNTRVFRKXACXGT 796
N+ +N+ L D L + LTALVS +T+VS G + +N R +C T
Sbjct: 505 NLSQNVNLTDKTLELISGLTALVSLNVSNTRVS-NAGLRHLKDLQNLRSLSLDSCRVT 561
>01_01_1208 +
9733010-9733114,9733920-9733979,9735254-9736280,
9736332-9736621
Length = 493
Score = 28.7 bits (61), Expect = 5.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 719 TPLYPLPLVTPMQSIISXWP 660
TP+ P+PLV P+ S WP
Sbjct: 368 TPVVPIPLVPPLWSCFPGWP 387
>01_05_0125 - 18382402-18382761,18382863-18383036
Length = 177
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 376 DVDSLQTYAPPRQSTERVVHEGSQCIQQHRHKPSE 272
++ +L PPR ST R+V E C+ + R + +E
Sbjct: 47 ELGALLPNLPPRASTTRIVEEAIACVGELRARTAE 81
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,724,247
Number of Sequences: 37544
Number of extensions: 496799
Number of successful extensions: 1125
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1123
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -