Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_P09
         (809 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0671 - 20571512-20571876,20571902-20572581,20573011-20573108     30   2.5  
03_01_0614 + 4515515-4515540,4515988-4516209,4516681-4516768,451...    29   4.4  
10_08_0941 - 21717703-21718091,21718454-21718564,21718707-217187...    29   5.8  
04_03_0496 + 16549333-16549465,16549620-16550020,16550412-165508...    29   5.8  
04_01_0095 - 991086-991487,992745-992903                               29   5.8  
11_03_0049 - 9318578-9319312                                           28   7.6  
02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949     28   7.6  

>07_03_0671 - 20571512-20571876,20571902-20572581,20573011-20573108
          Length = 380

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +1

Query: 265 PDHPLRPTYTLG*EGQVPGSHPGCIHDIPPAYKNSPRSCR 384
           P HP  P+Y +   G +P +    IHDI   Y     S R
Sbjct: 117 PRHPSAPSYVVAFRGTIPTNLGDLIHDIKIVYNTFSNSNR 156


>03_01_0614 +
           4515515-4515540,4515988-4516209,4516681-4516768,
           4517084-4517123,4517259-4517305,4517464-4517584,
           4517931-4518091
          Length = 234

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 177 STQRKAQQCYFKGETHRLFPPALGGEISHPRSPSSANLYP 296
           S Q++    +    T   +P ++ G  SHP +PSS+N+ P
Sbjct: 12  SQQQQPDPNFQDNPTQPWYPQSVVGSSSHPSTPSSSNVGP 51


>10_08_0941 -
           21717703-21718091,21718454-21718564,21718707-21718791,
           21718885-21719106,21719804-21720292,21722206-21722322
          Length = 470

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -3

Query: 672 RSNVPTLTSCVCGSIRGPRSSCRSTFLTNHGAPTANLQKRDCRDW 538
           R  V +L +  C  ++ P+ + R    T  G   A   +RDC+D+
Sbjct: 114 RLTVWSLVNTACIHVQWPKHASRGVSFTKDGKFAAICTRRDCKDY 158


>04_03_0496 +
           16549333-16549465,16549620-16550020,16550412-16550880,
           16552038-16552076,16553151-16553272,16553531-16553677,
           16554097-16554186,16554274-16554398,16554567-16554772,
           16554951-16555075,16555528-16555722,16556295-16556337,
           16556762-16557267,16558198-16558570,16559772-16560062,
           16560132-16561101,16561196-16561892,16562378-16562658,
           16562731-16563400,16563860-16564034,16565103-16565659
          Length = 2204

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
 Frame = -2

Query: 478 GPYASFVKCHLVPKGHFTP---LTDHGIESAENKCGTIADCFYMRAECHGCIQGDSQVLD 308
           G YA  V C      HF     LTD    S ++ C   A   Y+   C G  +  SQ L+
Sbjct: 416 GQYAHSVGCFDEAAFHFLEAARLTDS--RSMQSMCQVYASVSYI---CMGDAESTSQALE 470

Query: 307 LPSPGYR 287
           L  P YR
Sbjct: 471 LVGPAYR 477


>04_01_0095 - 991086-991487,992745-992903
          Length = 186

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
 Frame = -3

Query: 360 ICGRNVMDASRVTP---RYLTFLAQGIGWPKRVIGGV 259
           +CG  V+ A+  TP      T   Q +GWP   +GGV
Sbjct: 10  LCGMTVVAATSSTPWPSAVATGFGQSLGWPDPRVGGV 46


>11_03_0049 - 9318578-9319312
          Length = 244

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +2

Query: 26  DIPRSPPTQLALFADDTTVYYSSRNKSLIASKLQSAALTLGQWF 157
           D+P +PP  +A    D   Y   R+K ++ S+    +   G W+
Sbjct: 148 DLPPAPPPYVAALLRDKAPYPMMRSKLVLRSEAMDGSTFGGYWY 191


>02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949
          Length = 550

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +1

Query: 121 APECSVNPRTVVPKMAHRHQPSEKHSSV-ISKGKLT 225
           A    +NP ++V ++ +RH   EK++ + + KG++T
Sbjct: 477 AENAGLNPISIVTELRNRHAKGEKNAGINVRKGQIT 512


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,409,821
Number of Sequences: 37544
Number of extensions: 467745
Number of successful extensions: 1217
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1217
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)