Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_P09
(809 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 130 2e-30
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 130 2e-30
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 120 2e-27
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 108 8e-24
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 108 1e-23
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 108 1e-23
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 99 4e-21
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 99 4e-21
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 96 4e-20
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 67 3e-11
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 66 4e-11
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 66 4e-11
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 66 4e-11
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 66 4e-11
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 60 5e-09
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 60 5e-09
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 60 5e-09
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 60 5e-09
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 60 5e-09
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 60 5e-09
X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros... 45 1e-04
U14102-1|AAC46495.1| 299|Drosophila melanogaster putative rever... 44 3e-04
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 31 1.4
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 30 3.3
BT022556-1|AAY54972.1| 438|Drosophila melanogaster IP11886p pro... 30 4.3
AE014297-579|AAF54047.1| 438|Drosophila melanogaster CG14606-PA... 30 4.3
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 130 bits (314), Expect = 2e-30
Identities = 67/207 (32%), Positives = 108/207 (52%)
Frame = +2
Query: 2 TGFSLFINDIPRSPPTQLALFADDTTVYYSSRNKSLIASKLQSAALTLGQWFRKWRIDIN 181
T F++F +DIP++ L+LFADD VY + + S I +QS L +++KW+I IN
Sbjct: 675 TLFNIFTHDIPQATNCVLSLFADDAAVYSAGFSYSEINQSMQSYLNELDIYYKKWKIKIN 734
Query: 182 PAKSTAVLFQRGXXXXXXXXXXXXXXXXXXXXFGQPIPWARKVKYLGVTLDASMTFRPHI 361
P K+ A+ F + PI W ++YLG+ D +TF+ HI
Sbjct: 735 PNKTNAIFFTK-------RRKPRYLPDRQLRILDSPIQWVDNIRYLGIIFDKKLTFKYHI 787
Query: 362 KTVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQ 541
+ I+ LYP+I ++SK+S+ NK+ ++KT P++ Y S V+ A+THI LQ
Sbjct: 788 NNTIMKVNKIICTLYPLINRKSKLSISNKIIIFKTIFNPILMYGSPVWGRCAQTHIKKLQ 847
Query: 542 SLQSRFCRLAVGAPWFVRNVDLHDDLG 622
Q++ +L + P++ LH G
Sbjct: 848 ICQNKLLKLIMNLPYYTNTKYLHIKAG 874
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 130 bits (314), Expect = 2e-30
Identities = 67/207 (32%), Positives = 108/207 (52%)
Frame = +2
Query: 2 TGFSLFINDIPRSPPTQLALFADDTTVYYSSRNKSLIASKLQSAALTLGQWFRKWRIDIN 181
T F++F +DIP++ L+LFADD VY + + S I +QS L +++KW+I IN
Sbjct: 623 TLFNIFTHDIPQATNCVLSLFADDAAVYSAGFSYSEINQSMQSYLNELDIYYKKWKIKIN 682
Query: 182 PAKSTAVLFQRGXXXXXXXXXXXXXXXXXXXXFGQPIPWARKVKYLGVTLDASMTFRPHI 361
P K+ A+ F + PI W ++YLG+ D +TF+ HI
Sbjct: 683 PNKTNAIFFTK-------RRKPRYLPDRQLRILDSPIQWVDNIRYLGIIFDKKLTFKYHI 735
Query: 362 KTVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQ 541
+ I+ LYP+I ++SK+S+ NK+ ++KT P++ Y S V+ A+THI LQ
Sbjct: 736 NNTIMKVNKIICTLYPLINRKSKLSISNKIIIFKTIFNPILMYGSPVWGRCAQTHIKKLQ 795
Query: 542 SLQSRFCRLAVGAPWFVRNVDLHDDLG 622
Q++ +L + P++ LH G
Sbjct: 796 ICQNKLLKLIMNLPYYTNTKYLHIKAG 822
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown protein.
Length = 908
Score = 120 bits (289), Expect = 2e-27
Identities = 68/198 (34%), Positives = 95/198 (47%)
Frame = +2
Query: 26 DIPRSPPTQLALFADDTTVYYSSRNKSLIASKLQSAALTLGQWFRKWRIDINPAKSTAVL 205
D+ + LA FADD V Y SR + A +Q A +W R+W I IN +KS V
Sbjct: 662 DVSLYGKSMLATFADDVCVTYRSRCEHDAADGIQDFAYRFSEWARRWNIGINSSKSNNVC 721
Query: 206 FQRGXXXXXXXXXXXXXXXXXXXXFGQPIPWARKVKYLGVTLDASMTFRPHIKTVRDRAA 385
F P+P KYLGV LD +TF H+ +R R
Sbjct: 722 FTLKRRTPPPVYIEEV-----------PVPQPNAAKYLGVLLDRRLTFSKHVTDIRTRLR 770
Query: 386 FILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCR 565
+ + Y ++ RSK+SL NK+T+YK + P Y ++ A +HI +Q++Q++ R
Sbjct: 771 AKVAKHYWLLSSRSKLSLSNKLTIYKQILAPNWKYGCQIWGLACDSHIKRIQAIQNKVAR 830
Query: 566 LAVGAPWFVRNVDLHDDL 619
L G WFVRN LH DL
Sbjct: 831 LITGCEWFVRNTTLHRDL 848
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding protein,
3' end. ).
Length = 858
Score = 108 bits (260), Expect = 8e-24
Identities = 62/206 (30%), Positives = 103/206 (50%)
Frame = +2
Query: 2 TGFSLFINDIPRSPPTQLALFADDTTVYYSSRNKSLIASKLQSAALTLGQWFRKWRIDIN 181
T + ++ DIP + ++ FADDT + SR+ ++L + + +W WRI +N
Sbjct: 647 TLYLIYTADIPTNSRLTVSTFADDTAILSRSRSPIQATAQLALYLIDIKKWLSDWRIKVN 706
Query: 182 PAKSTAVLFQRGXXXXXXXXXXXXXXXXXXXXFGQPIPWARKVKYLGVTLDASMTFRPHI 361
K V F P+P A +V YLGV LD +T+R HI
Sbjct: 707 EQKCKHVTFTLNRQDCPPLLLNSI-----------PLPKADEVTYLGVHLDRRLTWRRHI 755
Query: 362 KTVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQ 541
+ + + L+ +I S +SL +KV LY + ++P+ TY S ++ +A+ ++ID +Q
Sbjct: 756 EAKKTQLKLKANNLHWLINSGSPLSLDHKVLLYNSILKPIWTYGSQLWGNASNSNIDIIQ 815
Query: 542 SLQSRFCRLAVGAPWFVRNVDLHDDL 619
QS+ R GAPW+VR+ ++ DL
Sbjct: 816 RAQSKILRTITGAPWYVRSENIQRDL 841
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 108 bits (259), Expect = 1e-23
Identities = 71/206 (34%), Positives = 103/206 (50%), Gaps = 2/206 (0%)
Frame = +2
Query: 8 FSLFINDIPRSPPTQLALFADDTTVYYSSRNKSLI-ASKLQSAALT-LGQWFRKWRIDIN 181
++L+ D P + FADDT + SR+K I A+ L S LT + +W WRI IN
Sbjct: 647 YTLYTADFPIDYNLTTSTFADDTAIL--SRSKCPIKATALLSRHLTSVERWLADWRISIN 704
Query: 182 PAKSTAVLFQRGXXXXXXXXXXXXXXXXXXXXFGQPIPWARKVKYLGVTLDASMTFRPHI 361
K V F IP A +V YLGV LD +T+R HI
Sbjct: 705 VQKCKQVTFTLNKQTCPPLVLNNIC-----------IPQADEVTYLGVHLDRRLTWRKHI 753
Query: 362 KTVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQ 541
+ L+ +I RS +SL K LY + ++P+ TY S ++ +A+R++ID +Q
Sbjct: 754 EAKSKHLKLKARNLHWLINARSPLSLEFKALLYNSVLKPIWTYGSELWGNASRSNIDIIQ 813
Query: 542 SLQSRFCRLAVGAPWFVRNVDLHDDL 619
QSR R+ GAPW++RN ++H DL
Sbjct: 814 RAQSRILRIITGAPWYLRNENIHRDL 839
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p protein.
Length = 888
Score = 108 bits (259), Expect = 1e-23
Identities = 71/206 (34%), Positives = 103/206 (50%), Gaps = 2/206 (0%)
Frame = +2
Query: 8 FSLFINDIPRSPPTQLALFADDTTVYYSSRNKSLI-ASKLQSAALT-LGQWFRKWRIDIN 181
++L+ D P + FADDT + SR+K I A+ L S LT + +W WRI IN
Sbjct: 647 YTLYTADFPIDYNLTTSTFADDTAIL--SRSKCPIKATALLSRHLTSVERWLADWRISIN 704
Query: 182 PAKSTAVLFQRGXXXXXXXXXXXXXXXXXXXXFGQPIPWARKVKYLGVTLDASMTFRPHI 361
K V F IP A +V YLGV LD +T+R HI
Sbjct: 705 VQKCKQVTFTLNKQTCPPLVLNNIC-----------IPQADEVTYLGVHLDRRLTWRKHI 753
Query: 362 KTVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQ 541
+ L+ +I RS +SL K LY + ++P+ TY S ++ +A+R++ID +Q
Sbjct: 754 EAKSKHLKLKARNLHWLINARSPLSLEFKALLYNSVLKPIWTYGSELWGNASRSNIDIIQ 813
Query: 542 SLQSRFCRLAVGAPWFVRNVDLHDDL 619
QSR R+ GAPW++RN ++H DL
Sbjct: 814 RAQSRILRIITGAPWYLRNENIHRDL 839
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 99 bits (238), Expect = 4e-21
Identities = 65/214 (30%), Positives = 103/214 (48%), Gaps = 8/214 (3%)
Frame = +2
Query: 2 TGFSLFINDIP-RSPPTQ-------LALFADDTTVYYSSRNKSLIASKLQSAALTLGQWF 157
T +S+F +D+P +P T+ +A +ADDT V S++ S LQ QW
Sbjct: 651 TLYSVFASDMPTHTPVTEVDEEDVLIATYADDTAVLTKSKSILAATSGLQEYLDAFQQWA 710
Query: 158 RKWRIDINPAKSTAVLFQRGXXXXXXXXXXXXXXXXXXXXFGQPIPWARKVKYLGVTLDA 337
W + IN K V F G+ I + KYLG+TLD
Sbjct: 711 ENWNVRINAEKCANVTFANRTGSCPGVSLN-----------GRLIRHHQAYKYLGITLDR 759
Query: 338 SMTFRPHIKTVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAA 517
+TF HI ++ + R+ +I R+K+SL KV +YK+ + P + Y V+ AA
Sbjct: 760 KLTFSRHITNIQQAFRTKVARMSWLIAPRNKLSLGCKVNIYKSILAPCLFYGLQVYGIAA 819
Query: 518 RTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDL 619
++H++ ++ LQ++ R GAPW++R D+ DL
Sbjct: 820 KSHLNKIRILQAKTLRRISGAPWYMRTRDIERDL 853
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p protein.
Length = 718
Score = 99 bits (238), Expect = 4e-21
Identities = 65/214 (30%), Positives = 103/214 (48%), Gaps = 8/214 (3%)
Frame = +2
Query: 2 TGFSLFINDIP-RSPPTQ-------LALFADDTTVYYSSRNKSLIASKLQSAALTLGQWF 157
T +S+F +D+P +P T+ +A +ADDT V S++ S LQ QW
Sbjct: 453 TLYSVFASDMPTHTPVTEVDEEDVLIATYADDTAVLTKSKSILAATSGLQEYLDAFQQWA 512
Query: 158 RKWRIDINPAKSTAVLFQRGXXXXXXXXXXXXXXXXXXXXFGQPIPWARKVKYLGVTLDA 337
W + IN K V F G+ I + KYLG+TLD
Sbjct: 513 ENWNVRINAEKCANVTFANRTGSCPGVSLN-----------GRLIRHHQAYKYLGITLDR 561
Query: 338 SMTFRPHIKTVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAA 517
+TF HI ++ + R+ +I R+K+SL KV +YK+ + P + Y V+ AA
Sbjct: 562 KLTFSRHITNIQQAFRTKVARMSWLIAPRNKLSLGCKVNIYKSILAPCLFYGLQVYGIAA 621
Query: 518 RTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDL 619
++H++ ++ LQ++ R GAPW++R D+ DL
Sbjct: 622 KSHLNKIRILQAKTLRRISGAPWYMRTRDIERDL 655
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p protein.
Length = 906
Score = 96.3 bits (229), Expect = 4e-20
Identities = 58/189 (30%), Positives = 90/189 (47%)
Frame = +2
Query: 53 LALFADDTTVYYSSRNKSLIASKLQSAALTLGQWFRKWRIDINPAKSTAVLFQRGXXXXX 232
LA +ADD + YSS + A LQ TL W ++W + +NP K+ F
Sbjct: 675 LATYADDIALLYSSNCCNEAARGLQEYLTTLAAWCKRWILKVNPQKTINPCFT-----LK 729
Query: 233 XXXXXXXXXXXXXXXFGQPIPWARKVKYLGVTLDASMTFRPHIKTVRDRAAFILGRLYPM 412
QP + KYLG+TLD +TF PH+K R + +L +
Sbjct: 730 TLSPVTAPIELEGVILDQP----SQAKYLGITLDKRLTFGPHLKATTRRCYQRMQQLRWL 785
Query: 413 ICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCRLAVGAPWFV 592
+ ++S M+LR K +Y C+ P+ Y ++ AA+++ + +Q LQ+R R P++V
Sbjct: 786 LNRKSTMTLRAKRAVYVHCVAPIWLYGIQIWGIAAKSNYNRIQVLQNRAMRAITDCPYYV 845
Query: 593 RNVDLHDDL 619
R LH DL
Sbjct: 846 RGTTLHRDL 854
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 66.9 bits (156), Expect = 3e-11
Identities = 56/214 (26%), Positives = 90/214 (42%), Gaps = 9/214 (4%)
Frame = +2
Query: 8 FSLFINDIP-----RSPPTQ---LALFADDTTVYYSSRNKSLIASKLQSAALTLGQWFRK 163
+S+F +D+P R PTQ L+ +ADDT V S + ++ T W K
Sbjct: 709 YSIFSSDMPLPYIYRPSPTQRIMLSTYADDTIVLSSDTLATAATRNNENYLKTFSDWADK 768
Query: 164 WRIDINPAKSTAVLFQRGXXXXXXXXXXXXXXXXXXXXFGQPIPWARKVKYLGVTLDASM 343
W I +N AK+ V+F GQ I K YLGVTLD+ +
Sbjct: 769 WGISVNAAKTGHVIFTLKNDLPTNSMNVKIK--------GQTIKKESKQSYLGVTLDSKL 820
Query: 344 TFRPHIKTVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAH-AAR 520
T H+ + + + +L ++ RSK+ + K+ + K+ + P+ YA +
Sbjct: 821 TLSSHVTKLLGKYSTAYRKLTWILNGRSKLPTKTKILILKSVLSPIWQYAIAAWGPLVTD 880
Query: 521 THIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLG 622
I +Q ++R R A + RN + D G
Sbjct: 881 AQIRRVQVEENRKIRDICRAGRYTRNQTIRDLFG 914
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 66.5 bits (155), Expect = 4e-11
Identities = 45/186 (24%), Positives = 81/186 (43%), Gaps = 1/186 (0%)
Frame = +2
Query: 53 LALFADDTTVYYSSRNKSLIASKLQSAALTLGQWFRKWRIDINPAKSTAVLFQRGXXXXX 232
LA +ADDT + S+ L + Q+ +W +KW I IN K+ +LF
Sbjct: 284 LATYADDTIILSRSKYTKLAINLNQNYLNVFCRWSKKWDIAINAKKTGHILFSLKKEQTN 343
Query: 233 XXXXXXXXXXXXXXXFGQPIPWARKVKYLGVTLDASMTFRPHIKTVRDRAAFILGRLYPM 412
GQ K +YLG+ LD +TF H+ ++ + +L +
Sbjct: 344 IYTPPLIN--------GQRAAKLNKQRYLGLMLDRRLTFCAHMTLLKGKTIAAYKKLEWL 395
Query: 413 ICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAH-AARTHIDTLQSLQSRFCRLAVGAPWF 589
I K S + K+ L+K + P+ YA ++ + T +Q++++++ R + A +
Sbjct: 396 IGKNSHLPKNAKILLWKQIVSPIWHYAIAIWGSLVSDTQAKKIQTMENKYIRRIINASRY 455
Query: 590 VRNVDL 607
R D+
Sbjct: 456 TRQADI 461
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 66.5 bits (155), Expect = 4e-11
Identities = 45/186 (24%), Positives = 81/186 (43%), Gaps = 1/186 (0%)
Frame = +2
Query: 53 LALFADDTTVYYSSRNKSLIASKLQSAALTLGQWFRKWRIDINPAKSTAVLFQRGXXXXX 232
LA +ADDT + S+ L + Q+ +W +KW I IN K+ +LF
Sbjct: 731 LATYADDTIILSRSKYTKLAINLNQNYLNVFCRWSKKWDIAINAKKTGHILFSLKKEQTN 790
Query: 233 XXXXXXXXXXXXXXXFGQPIPWARKVKYLGVTLDASMTFRPHIKTVRDRAAFILGRLYPM 412
GQ K +YLG+ LD +TF H+ ++ + +L +
Sbjct: 791 IYTPPLIN--------GQRAAKLNKQRYLGLMLDRRLTFCAHMTLLKGKTIAAYKKLEWL 842
Query: 413 ICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAH-AARTHIDTLQSLQSRFCRLAVGAPWF 589
I K S + K+ L+K + P+ YA ++ + T +Q++++++ R + A +
Sbjct: 843 IGKNSHLPKNAKILLWKQIVSPIWHYAIAIWGSLVSDTQAKKIQTMENKYIRRIINASRY 902
Query: 590 VRNVDL 607
R D+
Sbjct: 903 TRQADI 908
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 66.5 bits (155), Expect = 4e-11
Identities = 45/186 (24%), Positives = 81/186 (43%), Gaps = 1/186 (0%)
Frame = +2
Query: 53 LALFADDTTVYYSSRNKSLIASKLQSAALTLGQWFRKWRIDINPAKSTAVLFQRGXXXXX 232
LA +ADDT + S+ L + Q+ +W +KW I IN K+ +LF
Sbjct: 731 LATYADDTIILSRSKYTKLAINLNQNYLNVFCRWSKKWDIAINAKKTGHILFSLKKEQTN 790
Query: 233 XXXXXXXXXXXXXXXFGQPIPWARKVKYLGVTLDASMTFRPHIKTVRDRAAFILGRLYPM 412
GQ K +YLG+ LD +TF H+ ++ + +L +
Sbjct: 791 IYTPPLIN--------GQRAAKLNKQRYLGLMLDRRLTFCAHMTLLKGKTIAAYKKLEWL 842
Query: 413 ICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAH-AARTHIDTLQSLQSRFCRLAVGAPWF 589
I K S + K+ L+K + P+ YA ++ + T +Q++++++ R + A +
Sbjct: 843 IGKNSHLPKNAKILLWKQIVSPIWHYAIAIWGSLVSDTQAKKIQTMENKYIRRIINASRY 902
Query: 590 VRNVDL 607
R D+
Sbjct: 903 TRQADI 908
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 66.5 bits (155), Expect = 4e-11
Identities = 45/186 (24%), Positives = 81/186 (43%), Gaps = 1/186 (0%)
Frame = +2
Query: 53 LALFADDTTVYYSSRNKSLIASKLQSAALTLGQWFRKWRIDINPAKSTAVLFQRGXXXXX 232
LA +ADDT + S+ L + Q+ +W +KW I IN K+ +LF
Sbjct: 731 LATYADDTIILSRSKYTKLAINLNQNYLNVFCRWSKKWDIAINAKKTGHILFSLKKEQTN 790
Query: 233 XXXXXXXXXXXXXXXFGQPIPWARKVKYLGVTLDASMTFRPHIKTVRDRAAFILGRLYPM 412
GQ K +YLG+ LD +TF H+ ++ + +L +
Sbjct: 791 IYTPPLIN--------GQRAAKLNKQRYLGLMLDRRLTFCAHMTLLKGKTIAAYKKLEWL 842
Query: 413 ICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAH-AARTHIDTLQSLQSRFCRLAVGAPWF 589
I K S + K+ L+K + P+ YA ++ + T +Q++++++ R + A +
Sbjct: 843 IGKNSHLPKNAKILLWKQIVSPIWHYAIAIWGSLVSDTQAKKIQTMENKYIRRIINASRY 902
Query: 590 VRNVDL 607
R D+
Sbjct: 903 TRQADI 908
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 59.7 bits (138), Expect = 5e-09
Identities = 51/214 (23%), Positives = 88/214 (41%), Gaps = 9/214 (4%)
Frame = +2
Query: 8 FSLFINDIP-----RSPPTQ---LALFADDTTVYYSSRNKSLIASKLQSAALTLGQWFRK 163
+S+F +D+P R PT+ L+ +ADDT V S + ++ + W K
Sbjct: 697 YSIFSSDMPLPYIYRPSPTERIMLSTYADDTIVLSSDTLATAATRNNENYLKSFSDWADK 756
Query: 164 WRIDINPAKSTAVLFQRGXXXXXXXXXXXXXXXXXXXXFGQPIPWARKVKYLGVTLDASM 343
W I +N AK+ V+F GQ I K YLGV LD+ +
Sbjct: 757 WGISVNAAKTGHVIFTLKNDLPTSLRTMKIK--------GQVIKIESKQSYLGVILDSKL 808
Query: 344 TFRPHIKTVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAH-AAR 520
T H+ + + ++ ++ +RSK+ + K+ + K+ + P+ YA +
Sbjct: 809 TLSSHVTKLMGKYTTAYRKMTWILNRRSKLPTKTKMLILKSVLSPIWQYAIAAWGPLVTD 868
Query: 521 THIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLG 622
I +Q ++R R A + N + D G
Sbjct: 869 AQIRRIQVEENRKMRDICRAGRYTSNQTIRDRYG 902
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial cds.
).
Length = 964
Score = 59.7 bits (138), Expect = 5e-09
Identities = 51/211 (24%), Positives = 87/211 (41%), Gaps = 9/211 (4%)
Frame = +2
Query: 8 FSLFINDIP-----RSPPTQ---LALFADDTTVYYSSRNKSLIASKLQSAALTLGQWFRK 163
+S+F +D+P PT+ L+ +ADDT V S + ++ T W K
Sbjct: 581 YSIFSSDMPLPHIYHPSPTERIMLSTYADDTIVLSSDILATAATRNNENYLKTFSDWADK 640
Query: 164 WRIDINPAKSTAVLFQRGXXXXXXXXXXXXXXXXXXXXFGQPIPWARKVKYLGVTLDASM 343
W I +N AK+ V++ GQ I K YLGV LD+ +
Sbjct: 641 WGISVNAAKTGHVIYTLKNDIPTNLKTMKIK--------GQAIKKESKQSYLGVILDSKL 692
Query: 344 TFRPHIKTVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAH-AAR 520
T PH+ V + ++ ++ +RSK+ K+ + K+ + P+ YA +
Sbjct: 693 TLSPHVTKVVGKYLTAYRKMSWILNERSKLPTNTKMLILKSVLSPIWQYAIAAWGPLVTD 752
Query: 521 THIDTLQSLQSRFCRLAVGAPWFVRNVDLHD 613
I +Q ++R R A + +N + D
Sbjct: 753 AQIRRIQVEENRKMRDICRAGRYTKNQTIRD 783
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 59.7 bits (138), Expect = 5e-09
Identities = 51/211 (24%), Positives = 87/211 (41%), Gaps = 9/211 (4%)
Frame = +2
Query: 8 FSLFINDIP-----RSPPTQ---LALFADDTTVYYSSRNKSLIASKLQSAALTLGQWFRK 163
+S+F +D+P PT+ L+ +ADDT V S + ++ T W K
Sbjct: 697 YSIFSSDMPLPHIYHPSPTERIMLSTYADDTIVLSSDILATAATRNNENYLKTFSDWADK 756
Query: 164 WRIDINPAKSTAVLFQRGXXXXXXXXXXXXXXXXXXXXFGQPIPWARKVKYLGVTLDASM 343
W I +N AK+ V++ GQ I K YLGV LD+ +
Sbjct: 757 WGISVNAAKTGHVIYTLKNDIPTNLKTMKIK--------GQAIKKESKQSYLGVILDSKL 808
Query: 344 TFRPHIKTVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAH-AAR 520
T PH+ V + ++ ++ +RSK+ K+ + K+ + P+ YA +
Sbjct: 809 TLSPHVTKVVGKYLTAYRKMSWILNERSKLPTNTKMLILKSVLSPIWQYAIAAWGPLVTD 868
Query: 521 THIDTLQSLQSRFCRLAVGAPWFVRNVDLHD 613
I +Q ++R R A + +N + D
Sbjct: 869 AQIRRIQVEENRKMRDICRAGRYTKNQTIRD 899
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 59.7 bits (138), Expect = 5e-09
Identities = 51/211 (24%), Positives = 87/211 (41%), Gaps = 9/211 (4%)
Frame = +2
Query: 8 FSLFINDIP-----RSPPTQ---LALFADDTTVYYSSRNKSLIASKLQSAALTLGQWFRK 163
+S+F +D+P PT+ L+ +ADDT V S + ++ T W K
Sbjct: 697 YSIFSSDMPLPHIYHPSPTERIMLSTYADDTIVLSSDILATAATRNNENYLKTFSDWADK 756
Query: 164 WRIDINPAKSTAVLFQRGXXXXXXXXXXXXXXXXXXXXFGQPIPWARKVKYLGVTLDASM 343
W I +N AK+ V++ GQ I K YLGV LD+ +
Sbjct: 757 WGISVNAAKTGHVIYTLKNDIPTNLKTMKIK--------GQAIKKESKQSYLGVILDSKL 808
Query: 344 TFRPHIKTVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAH-AAR 520
T PH+ V + ++ ++ +RSK+ K+ + K+ + P+ YA +
Sbjct: 809 TLSPHVTKVVGKYLTAYRKMSWILNERSKLPTNTKMLILKSVLSPIWQYAIAAWGPLVTD 868
Query: 521 THIDTLQSLQSRFCRLAVGAPWFVRNVDLHD 613
I +Q ++R R A + +N + D
Sbjct: 869 AQIRRIQVEENRKMRDICRAGRYTKNQTIRD 899
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 59.7 bits (138), Expect = 5e-09
Identities = 51/211 (24%), Positives = 87/211 (41%), Gaps = 9/211 (4%)
Frame = +2
Query: 8 FSLFINDIP-----RSPPTQ---LALFADDTTVYYSSRNKSLIASKLQSAALTLGQWFRK 163
+S+F +D+P PT+ L+ +ADDT V S + ++ T W K
Sbjct: 659 YSIFSSDMPLPHIYHPSPTERIMLSTYADDTIVLSSDILATAATRNNENYLKTFSDWADK 718
Query: 164 WRIDINPAKSTAVLFQRGXXXXXXXXXXXXXXXXXXXXFGQPIPWARKVKYLGVTLDASM 343
W I +N AK+ V++ GQ I K YLGV LD+ +
Sbjct: 719 WGISVNAAKTGHVIYTLKNDIPTNLKTMKIK--------GQAIKKESKQSYLGVILDSKL 770
Query: 344 TFRPHIKTVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAH-AAR 520
T PH+ V + ++ ++ +RSK+ K+ + K+ + P+ YA +
Sbjct: 771 TLSPHVTKVVGKYLTAYRKMSWILNERSKLPTNTKMLILKSVLSPIWQYAIAAWGPLVTD 830
Query: 521 THIDTLQSLQSRFCRLAVGAPWFVRNVDLHD 613
I +Q ++R R A + +N + D
Sbjct: 831 AQIRRIQVEENRKMRDICRAGRYTKNQTIRD 861
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 59.7 bits (138), Expect = 5e-09
Identities = 51/211 (24%), Positives = 87/211 (41%), Gaps = 9/211 (4%)
Frame = +2
Query: 8 FSLFINDIP-----RSPPTQ---LALFADDTTVYYSSRNKSLIASKLQSAALTLGQWFRK 163
+S+F +D+P PT+ L+ +ADDT V S + ++ T W K
Sbjct: 697 YSIFSSDMPLPHIYHPSPTERIMLSTYADDTIVLSSDILATAATRNNENYLKTFSDWADK 756
Query: 164 WRIDINPAKSTAVLFQRGXXXXXXXXXXXXXXXXXXXXFGQPIPWARKVKYLGVTLDASM 343
W I +N AK+ V++ GQ I K YLGV LD+ +
Sbjct: 757 WGISVNAAKTGHVIYTLKNDIPTNLKTMKIK--------GQAIKKESKQSYLGVILDSKL 808
Query: 344 TFRPHIKTVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAH-AAR 520
T PH+ V + ++ ++ +RSK+ K+ + K+ + P+ YA +
Sbjct: 809 TLSPHVTKVVGKYLTAYRKMSWILNERSKLPTNTKMLILKSVLSPIWQYAIAAWGPLVTD 868
Query: 521 THIDTLQSLQSRFCRLAVGAPWFVRNVDLHD 613
I +Q ++R R A + +N + D
Sbjct: 869 AQIRRIQVEENRKMRDICRAGRYTKNQTIRD 899
>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type I retrotransposable
element R1Dm. ).
Length = 1021
Score = 44.8 bits (101), Expect = 1e-04
Identities = 22/79 (27%), Positives = 41/79 (51%)
Frame = +2
Query: 281 GQPIPWARKVKYLGVTLDASMTFRPHIKTVRDRAAFILGRLYPMICKRSKMSLRNKVTLY 460
G+ +P+ R +YLG+T+ M F HI ++R R ++G L ++ S R + T+Y
Sbjct: 725 GRNLPYVRSCRYLGITVSEGMKFLTHIASLRQRMTGVVGALARVLRADWGFSPRARRTIY 784
Query: 461 KTCIRPVMTYASVVFAHAA 517
+ P + + + V+ A
Sbjct: 785 DGLMAPCVLFGAPVWYDTA 803
>U14102-1|AAC46495.1| 299|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 299
Score = 43.6 bits (98), Expect = 3e-04
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Frame = +2
Query: 281 GQPIPWARKVKYLGVTLDASMTFRPHIKTVRDRAAFILGRLYPMICKRSKMSLRNKVTLY 460
GQ I K YLGV LD+ +T H+ + + ++ ++ +RSK+ + K+ +
Sbjct: 3 GQVIKIESKQSYLGVILDSKLTLSSHVTKLMGKYTTAYRKMTWILNRRSKLPTKTKMLIL 62
Query: 461 KTCIRPVMTYASVVFAH-AARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLG 622
K+ + P+ YA + I +Q ++R R A + N + D G
Sbjct: 63 KSVLSPIWQYAIAAWGPLVTDAQIRRIQVEENRKMRDICRAGRYTSNQTIRDRYG 117
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 31.5 bits (68), Expect = 1.4
Identities = 20/97 (20%), Positives = 44/97 (45%)
Frame = +2
Query: 290 IPWARKVKYLGVTLDASMTFRPHIKTVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTC 469
IP +K LG+TL+ + HI + + L + + + + + + K
Sbjct: 731 IPSVTSLKILGITLNNKYKWNTHINLLLPKLHNKLNIIKCLSSLKFNCNTHTLLNVAKAT 790
Query: 470 IRPVMTYASVVFAHAARTHIDTLQSLQSRFCRLAVGA 580
I + Y ++ HA ++ ++ +++ + RLA+GA
Sbjct: 791 IIAKLEYGLFLYGHAPKSILNKIKTPFNSAIRLALGA 827
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 30.3 bits (65), Expect = 3.3
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = +2
Query: 281 GQPIPWARKVKYLGVTLDASMTFRPHIKTVRDRAAF---ILGRLYPMI 415
G I A +KYLGV +D ++F+ H + +AA L R+ P +
Sbjct: 708 GVEIASAETLKYLGVLIDRRLSFKAHARYASKKAAMTAAALARIMPNV 755
>BT022556-1|AAY54972.1| 438|Drosophila melanogaster IP11886p
protein.
Length = 438
Score = 29.9 bits (64), Expect = 4.3
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = -3
Query: 291 IGWPKRVIGGVIFLLLMREEISGEFPL*NNTAVLFAGL 178
I P I G+IF+L++ ++SG F + N T+ +FA L
Sbjct: 236 INVPTLKIFGLIFVLIICNQLSGSFAIFNYTSHIFAEL 273
>AE014297-579|AAF54047.1| 438|Drosophila melanogaster CG14606-PA
protein.
Length = 438
Score = 29.9 bits (64), Expect = 4.3
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = -3
Query: 291 IGWPKRVIGGVIFLLLMREEISGEFPL*NNTAVLFAGL 178
I P I G+IF+L++ ++SG F + N T+ +FA L
Sbjct: 236 INVPTLKIFGLIFVLIICNQLSGSFAIFNYTSHIFAEL 273
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,870,031
Number of Sequences: 53049
Number of extensions: 765879
Number of successful extensions: 2283
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 2181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2282
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3798466620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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