Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_P07
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      27   2.3  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    27   4.0  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    26   5.4  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    26   5.4  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   5.4  
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    26   7.1  
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c...    26   7.1  
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    25   9.4  
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    25   9.4  

>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 431 YLHLVARREPTPKCHHCSGCNEDTAEH 511
           Y HL    + +P+C HC    ED A H
Sbjct: 305 YCHLDYHEQFSPRCKHCKTPIEDQAVH 331


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 597 TTVGSDKSGPIFATRTRRCSAKAGQYAS 514
           TT  + K+GP+F  +    SAK G  AS
Sbjct: 381 TTTSTSKTGPLFGNKPADPSAKPGATAS 408


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/24 (45%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
 Frame = +2

Query: 464 PKCHH--CSGCNEDTAEHTLAYCP 529
           P C H  CS C E   EH  + CP
Sbjct: 653 PNCGHAFCSNCMEPFYEHKTSTCP 676


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 415  RLFRSLPAPCRPEGADAEVPPLQWLQR 495
            R F SL A   PEG     P L+WL+R
Sbjct: 1209 RQFDSLTASLYPEGCYQLKPVLEWLKR 1235


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = +3

Query: 270  PCSRRGLAAWRTPPTGDGPSRRSAPSSRTG*IATEDVSPSGRHRCSRDTAVSVATCTLS 446
            P S    ++W +    D  +  SA  S T  IAT  VS S     +  +A   +T +++
Sbjct: 947  PTSSSSASSWSSSSEVDPSTAASATGSSTSSIATASVSGSSTSSVATASATDSSTSSIA 1005


>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
           Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 419 CFGRYLHLVARREPTPKCHHCSGCNEDTAEHTLAYC 526
           C G+       R  T +C  CS  + +TAE+ L  C
Sbjct: 136 CLGKTAPSDKNRYTTTECLACSKISNETAENLLFLC 171


>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 489

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 472 PPLQWLQRGHGGA 510
           P L W QRG+GGA
Sbjct: 341 PDLDWTQRGYGGA 353


>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -2

Query: 660 MVNSQKSSIACQDSSLPSIVATTVGSDKSGPIFATRTRRC 541
           +V  Q  ++A  +    S+VA    + K GP+F    R C
Sbjct: 645 VVVDQTKAVAYLNEIKDSVVAAFAWASKEGPMFEENLRSC 684


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -2

Query: 660 MVNSQKSSIACQDSSLPSIVATTVGSDKSGPIFATRTRRC 541
           +V  Q  ++A  +    S+VA    + K GP+F    R C
Sbjct: 645 VVVDQTKAVAYLNEIKDSVVAAFAWASKEGPMFEENLRSC 684


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,513,350
Number of Sequences: 5004
Number of extensions: 45375
Number of successful extensions: 140
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)