Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_P04
         (831 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0959 + 29692740-29693035,29693102-29693267,29693433-296936...    31   1.5  
07_03_1747 + 29188568-29188715,29188793-29189541                       30   2.0  
04_01_0159 - 1824343-1824405,1824485-1824595,1825282-1825448,182...    30   2.0  
08_02_0813 + 21459776-21461128                                         28   7.9  
04_01_0530 - 6928528-6929500,6929514-6930964                           28   7.9  
02_05_0822 + 32025992-32026696,32027237-32027314,32027547-320277...    28   7.9  
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...    28   7.9  
02_01_0054 - 404464-405152,406087-406618                               28   7.9  
01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892     28   7.9  

>04_04_0959 +
           29692740-29693035,29693102-29693267,29693433-29693612,
           29693703-29693771,29693888-29694088,29694187-29694240,
           29694325-29694386,29694488-29694620,29694789-29694899,
           29695008-29695104,29695638-29695714,29696129-29696194,
           29696431-29696583,29697392-29697447,29697524-29697584,
           29697656-29697766,29698010-29698144,29698217-29698447,
           29699001-29699075,29699161-29699282,29699381-29699453,
           29699538-29699642,29699728-29699895,29700079-29700148,
           29700224-29700375,29700574-29700651,29700744-29700836,
           29700961-29701098,29701237-29701276,29701350-29701423,
           29701777-29701911,29702345-29702464,29702778-29702939
          Length = 1287

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 23/80 (28%), Positives = 30/80 (37%)
 Frame = +3

Query: 102 CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPAFETC*HS*VRVHRANTGRSSNE 281
           CG        V H  L    V   LP R     +   A   C  + +R HR ++ RS   
Sbjct: 20  CGLAAVAAGQVRHSPLLRAPVPGLLPERQAPEGRRPLAASRCLPTCLRRHRRSSRRSHRR 79

Query: 282 LDRQTTELERRGSGAAALGW 341
             R++  L RR      LGW
Sbjct: 80  CRRRSPRLWRRSGSGFLLGW 99


>07_03_1747 + 29188568-29188715,29188793-29189541
          Length = 298

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = +3

Query: 396 PPPGTTLSAPVYLITAPSPG*SXWTLALQFLCS*TIGPTTCRLARSSSVLG 548
           PPP TT++  V L TA +   S   +  QF+C+     TTC  + S S+ G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260


>04_01_0159 -
           1824343-1824405,1824485-1824595,1825282-1825448,
           1825853-1826029,1826404-1826656
          Length = 256

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -3

Query: 427 TGAESVVPGGGCSRV*QYHVRPPQAFRGHQPSAAAPLPLRSNSVVCRSNS 278
           T + S    GGCS    +   PP AFRG+  +   P+    + V CR+ S
Sbjct: 59  TASASASASGGCSPAPPWAPSPP-AFRGNVKARYQPVMFNGSIVYCRTPS 107


>08_02_0813 + 21459776-21461128
          Length = 450

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +2

Query: 311 QGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPISM 490
           +G++ C  WL +  R   P   LL+   TT      R  V+      W K+  IS P+S+
Sbjct: 237 RGDYRCPAWLSTDARRLIPR--LLDPNPTT------RISVAQLVETPWFKKTSISRPVSI 288

Query: 491 QL 496
           +L
Sbjct: 289 EL 290


>04_01_0530 - 6928528-6929500,6929514-6930964
          Length = 807

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +3

Query: 75  VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 215
           +SP+LCY+ C   RK+       +L+  +  SGLPP++   S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515


>02_05_0822 +
           32025992-32026696,32027237-32027314,32027547-32027713,
           32027811-32027885,32028624-32028742,32028908-32029204,
           32029275-32029362,32029467-32029572,32029727-32029837,
           32030520-32030683,32031237-32031357,32031958-32032182,
           32032267-32032457,32032658-32032825,32032911-32033016,
           32033301-32033438,32033533-32033697,32033777-32033980,
           32034341-32034535,32034603-32034674,32034797-32034949
          Length = 1215

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 364 PPQAFR-GHQPSAAAPLPLRSNSVVCRSNS 278
           PP+ FR GH P AAAP PLR++     S S
Sbjct: 32  PPEKFRSGHLPRAAAP-PLRTDDGSVASGS 60


>02_01_0296 +
           1978565-1981197,1981216-1981639,1982280-1982771,
           1982950-1983087
          Length = 1228

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 425 GRGERSPRRWLQPRLAVPRQASTSVPRTP 339
           GRG RS  R L+P LA+   A + +P  P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470


>02_01_0054 - 404464-405152,406087-406618
          Length = 406

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
 Frame = -1

Query: 348 EDTSQVLQPHSPCVPTQSFVDPIHL-------KICLYSHGGLGLTNVSMSQMQGQVDYDF 190
           E  S  + P    V +  +VDP  L       K  +YS G L L  ++ S   G    D 
Sbjct: 260 EGFSAAVAPTRAAVGSPGYVDPFFLRTGIVSKKSDVYSFGVLLLEAITGSPAAGIPGPDG 319

Query: 189 GVGGGVPIVRCEERVDHEG 133
           G GGG    R   RV  EG
Sbjct: 320 GAGGGNLTARLLPRVRTEG 338


>01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892
          Length = 291

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +2

Query: 308 TQGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPIS 487
           T G   CS++L    R+W     +++   +      LRA   +N S +    +D+STP +
Sbjct: 131 TVGRSFCSSFLA---RIWNNTTPIVDTGLSPGYAALLRALCPSNASATATTAIDVSTPAT 187

Query: 488 MQLDN 502
             LDN
Sbjct: 188 --LDN 190


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,532,130
Number of Sequences: 37544
Number of extensions: 480642
Number of successful extensions: 1510
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1508
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)